Resource

Id DNase-seq/ENCSR325GNMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR325GNM [biosample_summary="Homo sapiens suppressor macrophage male adult (21 years)"]
Description
Labels
  • accession: ENCSR325GNM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000862/
  • biosample_summary: Homo sapiens suppressor macrophage male adult (21 years)
  • date_created: 2021-11-18T17:43:08.037559+00:00
  • date_released: 2022-06-07
  • doi: 10.17989/ENCSR325GNM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (21 years)
  • status: released
  • submitter_comment: This dataset includes replicates and files that were previously associated with dataset ENCSR371CCL.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR325GNM float

DNase-seq_ENCSR325GNM

DNase-seq ENCSR325GNM [biosample_summary="Homo sapiens suppressor macrophage male adult (21 years)"]
HISTOGRAM FOR DNase-seq_ENCSR325GNM [0.0341, 23.1]
n
25,484,056
mean
2
sd
2.39

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 254840560.79% 130897
chr1 2457451 0.99% 12661
chr2 2009517 0.83% 10320
chr3 1608130 0.81% 8251
chr4 1035018 0.54% 5368
chr5 1287746 0.71% 6587
chr6 1510401 0.88% 7718
chr7 1220203 0.77% 6292
chr8 1134165 0.78% 5866
chr9 1052121 0.76% 5433
chr10 1274907 0.95% 6561
chr11 1285186 0.95% 6542
chr12 1273623 0.96% 6526
chr13 573007 0.50% 2964
chr14 812556 0.76% 4170
chr15 869464 0.85% 4492
chr16 896796 0.99% 4627
chr17 1294871 1.56% 6552
chr18 514932 0.64% 2666
chr19 1122876 1.92% 5591
chr20 736368 1.14% 3797
chr21 300824 0.64% 1553
chr22 534465 1.05% 2747
chrX 655008 0.42% 3483
chrY 24421 0.04% 130
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 130897 2 1040 194.69 200
global segment-length histogram

Files

Filename Size md5
ENCFF619TQP.bed.gz 1.42 MB 96c09f19458fc5e612da809216d70803
ENCFF619TQP.tabix.bed.gz 1.3 MB e43d21685e8b680bcc34b633449d3876
ENCFF619TQP.tabix.bed.gz.tbi 464.5 KB fc174b9dc16e2139bebef8aff86d2acd
genomic_resource.yaml 1.33 KB bc646fb4bb354f06fa18b205c47af16a
statistics/