| Id: | DNase-seq/ENCSR324SGE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR324SGE [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF899NHX|/files/ENCFF899NHX/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 24182696 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR324SGE | float |
DNase-seq_ENCSR324SGE |
DNase-seq ENCSR324SGE [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours"]
|
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[0.414, 56.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF398WNG.bed.gz | 456.36 KB | 0ae7dedf79ba62f3f1cd9563283135ac |
| ENCFF398WNG.bed.gz.dvc | 100.0 B | 7fd1b2d914f566aded697014889d5af1 |
| ENCFF398WNG.tabix.bed.gz | 408.06 KB | e0258f7110dc6e735a68a06ab98b9e20 |
| ENCFF398WNG.tabix.bed.gz.dvc | 106.0 B | b3c449b70cb3d9767043bff533519e51 |
| ENCFF398WNG.tabix.bed.gz.tbi | 223.29 KB | edb4430a914a382964efbbeb5e14eede |
| ENCFF398WNG.tabix.bed.gz.tbi.dvc | 110.0 B | b63da73160aa875d0dfb7ef11322ef5d |
| genomic_resource.yaml | 2.44 KB | 3f23adfeeb86a60eb789207d4bfc264b |
| genomic_resource_original.yaml | 2.22 KB | 1e97faad7dad957495597d4894de7585 |
| statistics/ |