| Id: | DNase-seq/ENCSR324OTS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR324OTS [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with 100 ng/mL Interleukin-2 for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (39 years) treated with 100 ng/mL Interleukin-2 for 4 hours output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF127SBE|/files/ENCFF127SBE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR324OTS | float |
DNase-seq_ENCSR324OTS |
DNase-seq ENCSR324OTS [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with 100 ng/mL Interleukin-2 for 4 hours"]
|
 |
[0.0692, 46] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF254WJV.bed.gz | 942.3 KB | 704750e6c302e09d1feba54373c2cd01 |
| ENCFF254WJV.bed.gz.dvc | 100.0 B | 891789ac23f03a9f721c8d9e54cbce67 |
| ENCFF254WJV.tabix.bed.gz | 861.6 KB | 691f2a3cb3af1cb0077cb855de71ca32 |
| ENCFF254WJV.tabix.bed.gz.dvc | 106.0 B | 592450c80af11e1f28e1d119c2c59e4a |
| ENCFF254WJV.tabix.bed.gz.tbi | 326.27 KB | 4a252c52c6627936787a3ddb053c7a67 |
| ENCFF254WJV.tabix.bed.gz.tbi.dvc | 110.0 B | 451a065e7d39b0ff643d59004a020eae |
| genomic_resource.yaml | 2.33 KB | 79b69b64983d8dcce5b3fa9e4ae9b581 |
| genomic_resource_original.yaml | 2.17 KB | a452150a3e30dac4d315e02b0d8870b9 |
| statistics/ |