DNase-seq_ENCSR324NVG
DNase-seq ENCSR324NVG [biosample_summary="Homo sapiens posterior vena cava tissue female adult (47 years)"]
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| Id: | DNase-seq/ENCSR324NVG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR324NVG [biosample_summary="Homo sapiens posterior vena cava tissue female adult (47 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (47 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF019WJX|/files/ENCFF019WJX/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR324NVG | float |
DNase-seq_ENCSR324NVG |
DNase-seq ENCSR324NVG [biosample_summary="Homo sapiens posterior vena cava tissue female adult (47 years)"]
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[0.0309, 16.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF619MAD.bed.gz | 2.55 MB | 358ac0510b925704765baec0ce6b2521 |
| ENCFF619MAD.bed.gz.dvc | 101.0 B | e1d1a261e98a9b4f1c2bf73f5b4b5640 |
| ENCFF619MAD.tabix.bed.gz | 2.4 MB | 2a167c15f476502205a309e832e9c421 |
| ENCFF619MAD.tabix.bed.gz.dvc | 107.0 B | 87973f292e38656159e107739b39ff93 |
| ENCFF619MAD.tabix.bed.gz.tbi | 353.44 KB | 76172937732d468e22baa4831826d91a |
| ENCFF619MAD.tabix.bed.gz.tbi.dvc | 110.0 B | ea678d44a1e4db906de484a81c23ee2d |
| genomic_resource.yaml | 2.06 KB | da51bb1320306f302fca05f5d2f9412e |
| genomic_resource_original.yaml | 1.96 KB | d2a4536aa88dc0d83032e4cd11c05ac7 |
| statistics/ |