| Id: | DNase-seq/ENCSR323PWV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR323PWV [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF775TZI|/files/ENCFF775TZI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 43083262 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR323PWV | float |
DNase-seq_ENCSR323PWV |
DNase-seq ENCSR323PWV [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours"]
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[0.28, 23.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF042JET.bed.gz | 503.71 KB | d3fbc1b217935ee581e7450dbd780b35 |
| ENCFF042JET.bed.gz.dvc | 100.0 B | e47c0a8364a8228bad24374575c5464a |
| ENCFF042JET.tabix.bed.gz | 456.38 KB | 599d88bc38ac69aedcfe9b1af5f19f95 |
| ENCFF042JET.tabix.bed.gz.dvc | 106.0 B | df76559cd890bf02e182578963892d91 |
| ENCFF042JET.tabix.bed.gz.tbi | 238.3 KB | b0de84e1e95a9e808e54b8af719be619 |
| ENCFF042JET.tabix.bed.gz.tbi.dvc | 110.0 B | ada2e6462ab42368ff20c8487d960705 |
| genomic_resource.yaml | 2.65 KB | 1c0008586ef38a0e536d0b824894a273 |
| genomic_resource_original.yaml | 2.39 KB | ffc0438dff6d99634f9bccba25763efa |
| statistics/ |