| Id: | DNase-seq/ENCSR322BYN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR322BYN [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour output_type: peaks audit_error: Alignment file {ENCFF581PGG|/files/ENCFF581PGG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 13819776 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR322BYN | float |
DNase-seq_ENCSR322BYN |
DNase-seq ENCSR322BYN [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour"]
|
 |
[0.58, 112] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF986AGY.bed.gz | 331.71 KB | 75758b16180e5e60adae5a1cec24b698 |
| ENCFF986AGY.bed.gz.dvc | 100.0 B | 499e45ce4ddf9733342d9ecd1d42917a |
| ENCFF986AGY.tabix.bed.gz | 298.35 KB | d7bf05a3c72d8fc1f8f4068cc8c9e28d |
| ENCFF986AGY.tabix.bed.gz.dvc | 106.0 B | dd42d6e06052495807009b3c901ba121 |
| ENCFF986AGY.tabix.bed.gz.tbi | 171.79 KB | 53490d34bd6a105f909c29feed81751e |
| ENCFF986AGY.tabix.bed.gz.tbi.dvc | 110.0 B | 4e6d332170fe24920893aeea3e8ceea8 |
| genomic_resource.yaml | 2.38 KB | 573154607908b439da9d892899c3a7db |
| genomic_resource_original.yaml | 2.17 KB | 2e90b922b0bb0b81906260fc0099d9fd |
| statistics/ |