Resource

Id DNase-seq/ENCSR322BYNcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR322BYN [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour"]
Description
Labels
  • accession: ENCSR322BYN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour
  • date_created: 2020-04-18T22:21:49.827179+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR322BYN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR322BYN float

DNase-seq_ENCSR322BYN
DNase-seq ENCSR322BYN [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR322BYN [0.58, 112]
n
5,333,514
mean
13.9
sd
14.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 53335140.17% 30074
chr1 540791 0.22% 3054
chr2 364336 0.15% 2068
chr3 285916 0.14% 1623
chr4 175416 0.09% 979
chr5 229703 0.13% 1307
chr6 298613 0.17% 1683
chr7 240911 0.15% 1366
chr8 189011 0.13% 1078
chr9 210454 0.15% 1180
chr10 222523 0.17% 1267
chr11 277293 0.21% 1560
chr12 279869 0.21% 1555
chr13 104208 0.09% 597
chr14 187564 0.18% 1064
chr15 170164 0.17% 980
chr16 224353 0.25% 1253
chr17 345461 0.41% 1947
chr18 80156 0.10% 465
chr19 402771 0.69% 2194
chr20 148957 0.23% 857
chr21 62203 0.13% 360
chr22 135258 0.27% 765
chrX 157583 0.10% 872
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30074 20 660 177.35 180
global segment-length histogram

Files

Filename Size md5
ENCFF986AGY.bed.gz 331.71 KB 75758b16180e5e60adae5a1cec24b698
ENCFF986AGY.tabix.bed.gz 298.35 KB d7bf05a3c72d8fc1f8f4068cc8c9e28d
ENCFF986AGY.tabix.bed.gz.tbi 171.79 KB 53490d34bd6a105f909c29feed81751e
genomic_resource.yaml 2.38 KB 573154607908b439da9d892899c3a7db
statistics/