Resource
| Id | DNase-seq/ENCSR320PGJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR320PGJ [biosample_summary="Homo sapiens heart tissue male embryo (105 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (105 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN198HQF|/analyses/ENCAN198HQF/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF256IDF|/files/ENCFF256IDF/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 32680718 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF685GEJ|/files/ENCFF685GEJ/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 32467206 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR320PGJ | float |
DNase-seq_ENCSR320PGJ |
DNase-seq ENCSR320PGJ [biosample_summary="Homo sapiens heart tissue male embryo (105 days)"]
|
 |
[3, 1.55e+03] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 13353440 | 0.42% | 88734 |
| chr1 | 1254577 | 0.50% | 8340 |
| chr2 | 1065668 | 0.44% | 7081 |
| chr3 | 894714 | 0.45% | 5944 |
| chr4 | 727317 | 0.38% | 4834 |
| chr5 | 761179 | 0.42% | 5061 |
| chr6 | 836104 | 0.49% | 5553 |
| chr7 | 703590 | 0.44% | 4675 |
| chr8 | 623082 | 0.43% | 4133 |
| chr9 | 554086 | 0.40% | 3689 |
| chr10 | 662871 | 0.50% | 4402 |
| chr11 | 668758 | 0.50% | 4447 |
| chr12 | 658910 | 0.49% | 4372 |
| chr13 | 386194 | 0.34% | 2560 |
| chr14 | 397965 | 0.37% | 2642 |
| chr15 | 437242 | 0.43% | 2909 |
| chr16 | 401053 | 0.44% | 2666 |
| chr17 | 519724 | 0.62% | 3462 |
| chr18 | 315455 | 0.39% | 2093 |
| chr19 | 432387 | 0.74% | 2877 |
| chr20 | 321665 | 0.50% | 2136 |
| chr21 | 149006 | 0.32% | 991 |
| chr22 | 230949 | 0.45% | 1537 |
| chrX | 335044 | 0.21% | 2224 |
| chrY | 15900 | 0.03% | 106 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 88734 | 11 | 450 | 150.49 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF642WZB.bed.gz | 863.07 KB | f47130522668f3e4ec0cc83b108a3d0f |
| ENCFF642WZB.tabix.bed.gz | 740.85 KB | b444125b1380c669af0e4ccedbbd0183 |
| ENCFF642WZB.tabix.bed.gz.tbi | 425.21 KB | 57bfd5f3bc8f3716c61da5ad0b762a9d |
| genomic_resource.yaml | 2.57 KB | 804f4945554b175225fd908287d078f5 |
| statistics/ |