DNase-seq_ENCSR320PGJ
DNase-seq ENCSR320PGJ [biosample_summary="Homo sapiens heart tissue male embryo (105 days)"]
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| Id: | DNase-seq/ENCSR320PGJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR320PGJ [biosample_summary="Homo sapiens heart tissue male embryo (105 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (105 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN198HQF|/analyses/ENCAN198HQF/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF256IDF|/files/ENCFF256IDF/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 32680718 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF685GEJ|/files/ENCFF685GEJ/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 32467206 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR320PGJ | float |
DNase-seq_ENCSR320PGJ |
DNase-seq ENCSR320PGJ [biosample_summary="Homo sapiens heart tissue male embryo (105 days)"]
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[3, 1.55e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF642WZB.bed.gz | 863.07 KB | f47130522668f3e4ec0cc83b108a3d0f |
| ENCFF642WZB.bed.gz.dvc | 100.0 B | 73c9095df1cefb5ddc19ed6028dd5843 |
| ENCFF642WZB.tabix.bed.gz | 740.85 KB | b444125b1380c669af0e4ccedbbd0183 |
| ENCFF642WZB.tabix.bed.gz.dvc | 106.0 B | bc23bf8ccc8c36a721d00c3a91029baa |
| ENCFF642WZB.tabix.bed.gz.tbi | 425.21 KB | 57bfd5f3bc8f3716c61da5ad0b762a9d |
| ENCFF642WZB.tabix.bed.gz.tbi.dvc | 110.0 B | 77f792b99eb4f16751931979e25851b3 |
| genomic_resource.yaml | 2.57 KB | 804f4945554b175225fd908287d078f5 |
| genomic_resource_original.yaml | 2.48 KB | 534587654ec64823599a288f86a3fc06 |
| statistics/ |