Resource

Id DNase-seq/ENCSR318JAAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR318JAA [biosample_summary="Homo sapiens left renal pelvis tissue male embryo (105 days)"]
Description
Labels
  • accession: ENCSR318JAA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0018115/
  • biosample_summary: Homo sapiens left renal pelvis tissue male embryo (105 days)
  • date_created: 2015-09-16T21:42:30.475358+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR318JAA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (105 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR318JAA float

DNase-seq_ENCSR318JAA
DNase-seq ENCSR318JAA [biosample_summary="Homo sapiens left renal pelvis tissue male embryo (105 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR318JAA [3, 1.42e+03]
n
10,556,280
mean
42.9
sd
42.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 105562800.33% 70096
chr1 951760 0.38% 6315
chr2 847872 0.35% 5627
chr3 698741 0.35% 4635
chr4 565104 0.30% 3747
chr5 590503 0.33% 3925
chr6 620951 0.36% 4119
chr7 538756 0.34% 3577
chr8 481037 0.33% 3194
chr9 448292 0.32% 2978
chr10 516546 0.39% 3430
chr11 548463 0.41% 3640
chr12 527167 0.40% 3505
chr13 290391 0.25% 1931
chr14 344954 0.32% 2291
chr15 346476 0.34% 2297
chr16 334800 0.37% 2227
chr17 410800 0.49% 2735
chr18 260468 0.32% 1730
chr19 389811 0.67% 2592
chr20 263534 0.41% 1750
chr21 121350 0.26% 806
chr22 178924 0.35% 1191
chrX 270430 0.17% 1793
chrY 9150 0.02% 61
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 70096 7 450 150.6 150
global segment-length histogram

Files

Filename Size md5
ENCFF504EOC.bed.gz 679.57 KB 828a7b74b76a034d460f9fb56d46ef30
ENCFF504EOC.tabix.bed.gz 581.98 KB 862737e097e11f612296b0ae64938c31
ENCFF504EOC.tabix.bed.gz.tbi 371.16 KB 54f2dab60afebe1b828bb1c955cc4fe7
genomic_resource.yaml 1.41 KB f0d83e9c00b068c26b02087220ed0dfb
statistics/