Resource

Id DNase-seq/ENCSR316UDNcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR316UDN [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (37 years)"]
Description
Labels
  • accession: ENCSR316UDN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000625/
  • biosample_summary: Homo sapiens CD8-positive, alpha-beta T cell male adult (37 years)
  • date_created: 2015-09-16T21:42:06.363205+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR316UDN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR316UDN float

DNase-seq_ENCSR316UDN
DNase-seq ENCSR316UDN [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (37 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR316UDN [0.0253, 76.6]
n
20,357,906
mean
4.38
sd
8.67

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 203579060.63% 103522
chr1 2010993 0.81% 10180
chr2 1487117 0.61% 7656
chr3 1113318 0.56% 5790
chr4 766556 0.40% 3944
chr5 947482 0.52% 4917
chr6 1220137 0.71% 6177
chr7 960208 0.60% 4959
chr8 805911 0.56% 4083
chr9 823846 0.60% 4186
chr10 916317 0.68% 4665
chr11 1050757 0.78% 5337
chr12 998131 0.75% 5090
chr13 435086 0.38% 2227
chr14 720516 0.67% 3672
chr15 643797 0.63% 3328
chr16 760161 0.84% 3858
chr17 1167206 1.40% 5766
chr18 360158 0.45% 1860
chr19 1219449 2.08% 5866
chr20 557460 0.87% 2846
chr21 246461 0.53% 1252
chr22 463205 0.91% 2329
chrX 650339 0.42% 3358
chrY 33295 0.06% 176
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 103522 1 1080 196.65 180
global segment-length histogram

Files

Filename Size md5
ENCFF772TLO.bed.gz 1.15 MB f5daffdea905c72a26807a08940e3f2b
ENCFF772TLO.tabix.bed.gz 1.05 MB efa11615aec647aade4cc5e0bbb6e75c
ENCFF772TLO.tabix.bed.gz.tbi 359.02 KB d50f687d85949aaf6129f12c376dffb3
genomic_resource.yaml 1.26 KB a80e108f20ecbe2c6d52f0078a83a871
statistics/