| Id: | DNase-seq/ENCSR315WAC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR315WAC [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF935HDI|/files/ENCFF935HDI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 35185284 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR315WAC | float |
DNase-seq_ENCSR315WAC |
DNase-seq ENCSR315WAC [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours"]
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[0.285, 52.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF863BNN.bed.gz | 533.7 KB | 360d9f5b5d6c9a4f13f418db523f899b |
| ENCFF863BNN.bed.gz.dvc | 100.0 B | 5d2224ec62e4d931a9566b8d67197697 |
| ENCFF863BNN.tabix.bed.gz | 483.67 KB | b1b6bc870363f4addbc7166673977e49 |
| ENCFF863BNN.tabix.bed.gz.dvc | 106.0 B | bc3c1e1181ff5235b1263ec97ae00139 |
| ENCFF863BNN.tabix.bed.gz.tbi | 241.19 KB | f036f4d103b9d7c4ced769aa7204fd60 |
| ENCFF863BNN.tabix.bed.gz.tbi.dvc | 110.0 B | e22f4e24507a77be9a239edad3a2a9bf |
| genomic_resource.yaml | 2.44 KB | b1e31d3c8cfc505c115137ff0ee47ad5 |
| genomic_resource_original.yaml | 2.21 KB | 839482d0756a8762fe55c5183952a8f0 |
| statistics/ |