| Id: | DNase-seq/ENCSR314IBN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR314IBN [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour output_type: peaks audit_warning: Alignment file {ENCFF831BBW|/files/ENCFF831BBW/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 25009940 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR314IBN | float |
DNase-seq_ENCSR314IBN |
DNase-seq ENCSR314IBN [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour"]
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[0.481, 35] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF373PRB.bed.gz | 317.81 KB | 5cde4753878a238f3822b7bc22578856 |
| ENCFF373PRB.bed.gz.dvc | 100.0 B | 53f017ee45bfe3b0a3a7ad315c51a74b |
| ENCFF373PRB.tabix.bed.gz | 286.0 KB | 013c7486e635b9bb787b769f3d65c608 |
| ENCFF373PRB.tabix.bed.gz.dvc | 106.0 B | 343f7574b48d1dcba14f3aa01f1f48a0 |
| ENCFF373PRB.tabix.bed.gz.tbi | 167.07 KB | 41966a5bc331c15e334624234b41b36a |
| ENCFF373PRB.tabix.bed.gz.tbi.dvc | 110.0 B | bde713e85635b0fb07bc1e7577d19129 |
| genomic_resource.yaml | 2.45 KB | 5d42beb8e0894b6745e72357b633db25 |
| genomic_resource_original.yaml | 2.22 KB | d259f39754b068c59e5c309a9f440789 |
| statistics/ |