Resource

Id DNase-seq/ENCSR314IBNcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR314IBN [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour"]
Description
Labels
  • accession: ENCSR314IBN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour
  • date_created: 2020-04-19T18:36:49.508219+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR314IBN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR314IBN float

DNase-seq_ENCSR314IBN
DNase-seq ENCSR314IBN [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR314IBN [0.481, 35]
n
5,515,959
mean
6.59
sd
5.47

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 55159590.17% 28957
chr1 568876 0.23% 2986
chr2 380444 0.16% 1978
chr3 295329 0.15% 1545
chr4 187754 0.10% 966
chr5 238455 0.13% 1268
chr6 306474 0.18% 1602
chr7 252293 0.16% 1333
chr8 189891 0.13% 1029
chr9 224136 0.16% 1168
chr10 232528 0.17% 1228
chr11 284431 0.21% 1506
chr12 282123 0.21% 1484
chr13 111043 0.10% 573
chr14 192107 0.18% 1009
chr15 179577 0.18% 953
chr16 242264 0.27% 1265
chr17 353665 0.42% 1861
chr18 80470 0.10% 420
chr19 415298 0.71% 2115
chr20 155643 0.24% 837
chr21 60556 0.13% 334
chr22 137247 0.27% 732
chrX 145355 0.09% 765
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 28957 12 720 190.49 180
global segment-length histogram

Files

Filename Size md5
ENCFF373PRB.bed.gz 317.81 KB 5cde4753878a238f3822b7bc22578856
ENCFF373PRB.tabix.bed.gz 286.0 KB 013c7486e635b9bb787b769f3d65c608
ENCFF373PRB.tabix.bed.gz.tbi 167.07 KB 41966a5bc331c15e334624234b41b36a
genomic_resource.yaml 2.45 KB 5d42beb8e0894b6745e72357b633db25
statistics/