| Id: | DNase-seq/ENCSR312ZTS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR312ZTS [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF836TDX|/files/ENCFF836TDX/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 31016008 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR312ZTS | float |
DNase-seq_ENCSR312ZTS |
DNase-seq ENCSR312ZTS [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"]
|
 |
[0.323, 56.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF912GKJ.bed.gz | 435.61 KB | 0ce30dffea22a95bc96bb550a969fb67 |
| ENCFF912GKJ.bed.gz.dvc | 100.0 B | b2953576f46c62ac90c784479f509214 |
| ENCFF912GKJ.tabix.bed.gz | 395.09 KB | 6faca8031d52ce681118c64afd58936e |
| ENCFF912GKJ.tabix.bed.gz.dvc | 106.0 B | 76323ef15ad00f25a4e4f098d199d9c8 |
| ENCFF912GKJ.tabix.bed.gz.tbi | 202.31 KB | 656e67e8cb4c4fa06fed09a3bd2ee39e |
| ENCFF912GKJ.tabix.bed.gz.tbi.dvc | 110.0 B | 4ffd5d934d73d68437ff469ee4870599 |
| genomic_resource.yaml | 2.21 KB | 7119c5ef0365762ab292577a4c26711f |
| genomic_resource_original.yaml | 2.03 KB | e42e1909d799dba7bca9fb978171805d |
| statistics/ |