DNase-seq_ENCSR311EEL
DNase-seq ENCSR311EEL [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR311EEL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR311EEL [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF764MTB|/files/ENCFF764MTB/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR311EEL | float |
DNase-seq_ENCSR311EEL |
DNase-seq ENCSR311EEL [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
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[0.0501, 18.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF306FTN.bed.gz | 1013.97 KB | 03a6c90cbffef423df2c92919f9e328e |
| ENCFF306FTN.bed.gz.dvc | 101.0 B | d876325adfa5a46f394a2f76f8dec172 |
| ENCFF306FTN.tabix.bed.gz | 928.6 KB | 52277ef9e89f65a9dfbfb20d2bb7efae |
| ENCFF306FTN.tabix.bed.gz.dvc | 106.0 B | 41b9ee19de9f6ab29f2cf975506a57c3 |
| ENCFF306FTN.tabix.bed.gz.tbi | 299.41 KB | 1dd58dbc0a2785c81185c701ae514938 |
| ENCFF306FTN.tabix.bed.gz.tbi.dvc | 110.0 B | 4079dae6f7a7e352eebbff064202c2ca |
| genomic_resource.yaml | 2.28 KB | ac7cb1f2064b9d06c56e92288d81bbcf |
| genomic_resource_original.yaml | 2.12 KB | 6c137e65c7988c72e7e40eec18d7aa42 |
| statistics/ |