DNase-seq_ENCSR310ZGQ
DNase-seq ENCSR310ZGQ [biosample_summary="Homo sapiens T-cell male adult (26 years)"]
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| Id: | DNase-seq/ENCSR310ZGQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR310ZGQ [biosample_summary="Homo sapiens T-cell male adult (26 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (26 years) output_type: peaks audit_warning: Alignment file {ENCFF992HSL|/files/ENCFF992HSL/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 46256294 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR310ZGQ | float |
DNase-seq_ENCSR310ZGQ |
DNase-seq ENCSR310ZGQ [biosample_summary="Homo sapiens T-cell male adult (26 years)"]
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[0.239, 152] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF078NYB.bed.gz | 468.65 KB | 5834a4b1ccc544ef3a967ef3fe138fe8 |
| ENCFF078NYB.bed.gz.dvc | 100.0 B | 147e896b26d622bac13c86bde5eb3cfc |
| ENCFF078NYB.tabix.bed.gz | 424.67 KB | f421bdc73520d7cae48d33f39fa1db39 |
| ENCFF078NYB.tabix.bed.gz.dvc | 106.0 B | 3b9cab73a47b4c967029d9d3bd577513 |
| ENCFF078NYB.tabix.bed.gz.tbi | 210.68 KB | b65349b65f7432dfb95d02fa7c04192c |
| ENCFF078NYB.tabix.bed.gz.tbi.dvc | 110.0 B | 1e34cd4347a363a2e1cda39e37251e13 |
| genomic_resource.yaml | 1.79 KB | 0af18d1eafdd217c87a786a5df61e50e |
| genomic_resource_original.yaml | 1.7 KB | 13a87b571d614e6bc10d3392b8f2b6b2 |
| statistics/ |