Resource

Id DNase-seq/ENCSR309YDNcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR309YDN [biosample_summary="Homo sapiens muscle of arm tissue female embryo (85 days)"]
Description
Labels
  • accession: ENCSR309YDN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001499/
  • biosample_summary: Homo sapiens muscle of arm tissue female embryo (85 days)
  • date_created: 2015-09-16T21:42:39.095345+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR309YDN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (85 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR309YDN float

DNase-seq_ENCSR309YDN
DNase-seq ENCSR309YDN [biosample_summary="Homo sapiens muscle of arm tissue female embryo (85 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR309YDN [0.201, 18.6]
n
12,360,681
mean
2.53
sd
2.16

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 123606810.38% 66082
chr1 1121422 0.45% 5971
chr2 989514 0.41% 5299
chr3 831084 0.42% 4418
chr4 641984 0.34% 3474
chr5 688431 0.38% 3684
chr6 767510 0.45% 4075
chr7 621200 0.39% 3369
chr8 589988 0.41% 3177
chr9 532493 0.38% 2791
chr10 572712 0.43% 3100
chr11 632711 0.47% 3370
chr12 628557 0.47% 3343
chr13 346571 0.30% 1859
chr14 403883 0.38% 2121
chr15 401345 0.39% 2114
chr16 378865 0.42% 2039
chr17 489615 0.59% 2641
chr18 264508 0.33% 1475
chr19 473318 0.81% 2354
chr20 299246 0.46% 1647
chr21 136239 0.29% 757
chr22 190743 0.38% 1052
chrX 358602 0.23% 1951
chrY 140 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 66082 2 880 187.05 180
global segment-length histogram

Files

Filename Size md5
ENCFF573KDT.bed.gz 696.58 KB 14f547ddc5be68391170b9c46a5d3587
ENCFF573KDT.tabix.bed.gz 624.32 KB 5ca017f2fd30e695dfb8cc41b0f09843
ENCFF573KDT.tabix.bed.gz.tbi 347.89 KB dd4e7790bdad60d337a04dea65495750
genomic_resource.yaml 1.84 KB 6a919015115cdebc44980fa2fc243a22
statistics/