DNase-seq_ENCSR309YDN
DNase-seq ENCSR309YDN [biosample_summary="Homo sapiens muscle of arm tissue female embryo (85 days)"]
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| Id: | DNase-seq/ENCSR309YDN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR309YDN [biosample_summary="Homo sapiens muscle of arm tissue female embryo (85 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (85 days) output_type: peaks audit_warning: Alignment file {ENCFF638RZK|/files/ENCFF638RZK/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 34958520 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR309YDN | float |
DNase-seq_ENCSR309YDN |
DNase-seq ENCSR309YDN [biosample_summary="Homo sapiens muscle of arm tissue female embryo (85 days)"]
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[0.201, 18.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF573KDT.bed.gz | 696.58 KB | 14f547ddc5be68391170b9c46a5d3587 |
| ENCFF573KDT.bed.gz.dvc | 100.0 B | a969ed41defcc1b949ae41ea4717d505 |
| ENCFF573KDT.tabix.bed.gz | 624.32 KB | 5ca017f2fd30e695dfb8cc41b0f09843 |
| ENCFF573KDT.tabix.bed.gz.dvc | 106.0 B | ccce6e465af56a3a2e101a9669244863 |
| ENCFF573KDT.tabix.bed.gz.tbi | 347.89 KB | dd4e7790bdad60d337a04dea65495750 |
| ENCFF573KDT.tabix.bed.gz.tbi.dvc | 110.0 B | 1d7cd9eb09e27688d750ef3dd612c7e8 |
| genomic_resource.yaml | 1.84 KB | 6a919015115cdebc44980fa2fc243a22 |
| genomic_resource_original.yaml | 1.74 KB | e60804d38e23425c07443fe98df84484 |
| statistics/ |