DNase-seq_ENCSR309FOO
DNase-seq ENCSR309FOO [biosample_summary="Homo sapiens brain tissue female embryo (117 days)"]
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| Id: | DNase-seq/ENCSR309FOO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR309FOO [biosample_summary="Homo sapiens brain tissue female embryo (117 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (117 days) output_type: peaks audit_warning: Alignment file {ENCFF436UQZ|/files/ENCFF436UQZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 24776785 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR309FOO | float |
DNase-seq_ENCSR309FOO |
DNase-seq ENCSR309FOO [biosample_summary="Homo sapiens brain tissue female embryo (117 days)"]
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[0.243, 61.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF079REB.bed.gz | 815.81 KB | caa6ee3e615a748fcafce6153fb6e28d |
| ENCFF079REB.bed.gz.dvc | 100.0 B | b56140f5d1ca14773c2d77a8c21e6b16 |
| ENCFF079REB.tabix.bed.gz | 726.59 KB | d274ec49bdf959d677bd185c911ad52f |
| ENCFF079REB.tabix.bed.gz.dvc | 106.0 B | aaa2d545caa33bd7dcbeb66d9a32f476 |
| ENCFF079REB.tabix.bed.gz.tbi | 424.33 KB | a56b56ba8fb9a4f43eb9c619161debdc |
| ENCFF079REB.tabix.bed.gz.tbi.dvc | 110.0 B | e361c66de887d3c8f5f114d244dca73a |
| genomic_resource.yaml | 1.82 KB | f0710ef91b92c502984531120859ea25 |
| genomic_resource_original.yaml | 1.73 KB | 050b1f773bba12811d880aac9dd54cb0 |
| statistics/ |