Resource

Id DNase-seq/ENCSR309FOOcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR309FOO [biosample_summary="Homo sapiens brain tissue female embryo (117 days)"]
Description
Labels
  • accession: ENCSR309FOO
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000955/
  • biosample_summary: Homo sapiens brain tissue female embryo (117 days)
  • date_created: 2015-09-16T21:42:27.912766+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR309FOO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (117 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR309FOO float

DNase-seq_ENCSR309FOO
DNase-seq ENCSR309FOO [biosample_summary="Homo sapiens brain tissue female embryo (117 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR309FOO [0.243, 61.4]
n
13,099,039
mean
4.06
sd
4.87

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 130990390.41% 76405
chr1 1094204 0.44% 6407
chr2 1077931 0.45% 6347
chr3 915118 0.46% 5328
chr4 726135 0.38% 4304
chr5 798068 0.44% 4652
chr6 787225 0.46% 4587
chr7 714903 0.45% 4183
chr8 669761 0.46% 3912
chr9 534202 0.39% 3124
chr10 597580 0.45% 3504
chr11 656178 0.49% 3824
chr12 668652 0.50% 3876
chr13 407291 0.36% 2396
chr14 440421 0.41% 2525
chr15 385269 0.38% 2249
chr16 398716 0.44% 2310
chr17 458085 0.55% 2635
chr18 312849 0.39% 1844
chr19 404844 0.69% 2207
chr20 315207 0.49% 1867
chr21 143769 0.31% 833
chr22 184895 0.36% 1082
chrX 407456 0.26% 2407
chrY 280 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 76405 1 778 171.44 164
global segment-length histogram

Files

Filename Size md5
ENCFF079REB.bed.gz 815.81 KB caa6ee3e615a748fcafce6153fb6e28d
ENCFF079REB.tabix.bed.gz 726.59 KB d274ec49bdf959d677bd185c911ad52f
ENCFF079REB.tabix.bed.gz.tbi 424.33 KB a56b56ba8fb9a4f43eb9c619161debdc
genomic_resource.yaml 1.82 KB f0710ef91b92c502984531120859ea25
statistics/