| Id: | DNase-seq/ENCSR306LNA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR306LNA [biosample_summary="Homo sapiens with Alzheimer''s disease, Cognitive impairment; dorsolateral prefrontal cortex tissue male adult (73 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (73 years) with Alzheimer's disease, Cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF147OGX|/files/ENCFF147OGX/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.26. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR306LNA | float |
DNase-seq_ENCSR306LNA |
DNase-seq ENCSR306LNA [biosample_summary="Homo sapiens with Alzheimer''s disease, Cognitive impairment; dorsolateral prefrontal cortex tissue male adult (73 years)"]
|
 |
[0.0373, 12.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF870ORN.bed.gz | 1.47 MB | 3f855e499a8693f45f2bb36c834ed2da |
| ENCFF870ORN.bed.gz.dvc | 101.0 B | 2029dacfe765edab373d6cd3642f8e27 |
| ENCFF870ORN.tabix.bed.gz | 1.38 MB | e69055d29507bb219840c25869d71e21 |
| ENCFF870ORN.tabix.bed.gz.dvc | 107.0 B | a8aad00ee3de59df543ea2f97befcdf9 |
| ENCFF870ORN.tabix.bed.gz.tbi | 307.27 KB | b53a3e7449450977baca1e6fed23985f |
| ENCFF870ORN.tabix.bed.gz.tbi.dvc | 110.0 B | d598b897aaa30f3b8e73d42c37fa4835 |
| genomic_resource.yaml | 2.33 KB | 7ff4b5442799a270f2ca985fe4c6c0e0 |
| genomic_resource_original.yaml | 2.16 KB | fe4034a6cfbd0429765b6d154a5cf12d |
| statistics/ |