DNase-seq_ENCSR306BHE
DNase-seq ENCSR306BHE [biosample_summary="Homo sapiens RWPE2"]
×
| Id: | DNase-seq/ENCSR306BHE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR306BHE [biosample_summary="Homo sapiens RWPE2"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF407ORW|/files/ENCFF407ORW/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR306BHE | float |
DNase-seq_ENCSR306BHE |
DNase-seq ENCSR306BHE [biosample_summary="Homo sapiens RWPE2"]
|
|
[0.0469, 19.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF939OBM.bed.gz | 1.13 MB | e4ba3a533a721b5b86d260cf671bfea7 |
| ENCFF939OBM.bed.gz.dvc | 101.0 B | 3287a9827e1f84f47c717081734fa741 |
| ENCFF939OBM.tabix.bed.gz | 1.07 MB | 2bce5683fe309c293811c8a567c2ef68 |
| ENCFF939OBM.tabix.bed.gz.dvc | 107.0 B | 211b23ab335325ac19e8679e5c440ae7 |
| ENCFF939OBM.tabix.bed.gz.tbi | 244.65 KB | 19924b25a036ebaa0d9e8d32bf5b33b0 |
| ENCFF939OBM.tabix.bed.gz.tbi.dvc | 110.0 B | 1467688ccd4dcdeedc5995e64121a503 |
| genomic_resource.yaml | 1.91 KB | 6379640e7256e2db27494400d398b6eb |
| genomic_resource_original.yaml | 1.84 KB | c8d82c4a1216d53b02df31cea8e207a5 |
| statistics/ |