DNase-seq_ENCSR305WAA
DNase-seq ENCSR305WAA [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR305WAA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR305WAA [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF315HVS|/files/ENCFF315HVS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR305WAA | float |
DNase-seq_ENCSR305WAA |
DNase-seq ENCSR305WAA [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
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[0.0845, 18.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF034FHR.bed.gz | 624.37 KB | 57031ec2a36ad0a536cff8a958d2b7bd |
| ENCFF034FHR.bed.gz.dvc | 100.0 B | e88b27c542b858c5df047ce08805e690 |
| ENCFF034FHR.tabix.bed.gz | 566.75 KB | 59f05adcfb53d39fae3fe0bef7c4df1e |
| ENCFF034FHR.tabix.bed.gz.dvc | 106.0 B | 8cb560c8052dd18a57b1d62a70c9a03d |
| ENCFF034FHR.tabix.bed.gz.tbi | 267.48 KB | 8352116f7253ce744a757cd12eba6417 |
| ENCFF034FHR.tabix.bed.gz.tbi.dvc | 110.0 B | 1eb4205c13a3900af69c8af67afc98a3 |
| genomic_resource.yaml | 2.29 KB | 5aaf4d0b460897ac44d240d26a368aed |
| genomic_resource_original.yaml | 2.13 KB | da2f92128e86f7b9d24bc0a2d4c0fade |
| statistics/ |