DNase-seq_ENCSR305UJX
DNase-seq ENCSR305UJX [biosample_summary="Homo sapiens heart tissue male child (3 years)"]
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| Id: | DNase-seq/ENCSR305UJX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR305UJX [biosample_summary="Homo sapiens heart tissue male child (3 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male child (3 years) output_type: peaks audit_warning: Alignment file {ENCFF867EBM|/files/ENCFF867EBM/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 36747000 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF867EBM|/files/ENCFF867EBM/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR305UJX | float |
DNase-seq_ENCSR305UJX |
DNase-seq ENCSR305UJX [biosample_summary="Homo sapiens heart tissue male child (3 years)"]
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[0.219, 11.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF730ORU.bed.gz | 518.12 KB | 09050cdc99615067e80f5bb071a69b3b |
| ENCFF730ORU.bed.gz.dvc | 100.0 B | 94c69cd384489fbf55c19362569b5243 |
| ENCFF730ORU.tabix.bed.gz | 460.84 KB | 93c94f4b4cb89704b07ccea020ccd348 |
| ENCFF730ORU.tabix.bed.gz.dvc | 106.0 B | 586be5c383b23aca19ec5daece39bf9f |
| ENCFF730ORU.tabix.bed.gz.tbi | 289.46 KB | b45696bd4b8e244c8da69ab0f35dede0 |
| ENCFF730ORU.tabix.bed.gz.tbi.dvc | 110.0 B | 062c6d7b9d60359b51d7d4a8eda1817b |
| genomic_resource.yaml | 2.63 KB | 94f2b4adcaca9cd20154712c0bb12dd9 |
| genomic_resource_original.yaml | 2.54 KB | 1124e23f877bf6641fe628f416baa59c |
| statistics/ |