Resource

Id DNase-seq/ENCSR304CXScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR304CXS [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell"]
Description
Labels
  • accession: ENCSR304CXS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000895/
  • biosample_summary: Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell
  • date_created: 2022-02-07T22:20:21.358109+00:00
  • date_released: 2022-02-25
  • doi: 10.17989/ENCSR304CXS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR304CXS float

DNase-seq_ENCSR304CXS
DNase-seq ENCSR304CXS [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell"]
 HISTOGRAM FOR DNase-seq_ENCSR304CXS [0.0643, 46.5]
n
14,230,816
mean
3.56
sd
5.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 142308160.44% 70035
chr1 1424358 0.57% 6935
chr2 1080269 0.45% 5323
chr3 810678 0.41% 4019
chr4 561422 0.30% 2750
chr5 670432 0.37% 3306
chr6 888792 0.52% 4287
chr7 674964 0.42% 3338
chr8 542709 0.37% 2719
chr9 560927 0.41% 2785
chr10 655864 0.49% 3225
chr11 708717 0.52% 3521
chr12 737134 0.55% 3598
chr13 331613 0.29% 1604
chr14 507453 0.47% 2496
chr15 454039 0.45% 2272
chr16 509228 0.56% 2528
chr17 792536 0.95% 3883
chr18 247262 0.31% 1219
chr19 744395 1.27% 3615
chr20 369469 0.57% 1862
chr21 177728 0.38% 882
chr22 300869 0.59% 1495
chrX 479773 0.31% 2371
chrY 185 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 70035 1 1100 203.2 200
global segment-length histogram

Files

Filename Size md5
ENCFF180WXO.bed.gz 773.3 KB 462ae0b368cedc2f0ec1d23f9a011452
ENCFF180WXO.tabix.bed.gz 714.12 KB cd6b92462c2f6495abdb1e176d868a0b
ENCFF180WXO.tabix.bed.gz.tbi 296.71 KB 4e2c995d1dda8f391ce6ef9fe45f8576
genomic_resource.yaml 1.21 KB da779ba22e73c8cf89531315b92524ad
statistics/