Resource

Id DNase-seq/ENCSR302MYXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR302MYX [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell"]
Description
Labels
  • accession: ENCSR302MYX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000895/
  • biosample_summary: Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell
  • date_created: 2022-02-07T22:20:21.788087+00:00
  • date_released: 2022-02-25
  • doi: 10.17989/ENCSR302MYX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR302MYX float

DNase-seq_ENCSR302MYX
DNase-seq ENCSR302MYX [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell"]
 HISTOGRAM FOR DNase-seq_ENCSR302MYX [0.0857, 97.8]
n
14,114,006
mean
5.34
sd
9.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 141140060.44% 72453
chr1 1403765 0.56% 7183
chr2 1062259 0.44% 5433
chr3 815395 0.41% 4182
chr4 552682 0.29% 2848
chr5 665008 0.37% 3404
chr6 851603 0.50% 4346
chr7 666622 0.42% 3421
chr8 537898 0.37% 2785
chr9 549046 0.40% 2865
chr10 642599 0.48% 3306
chr11 715611 0.53% 3683
chr12 732986 0.55% 3773
chr13 327424 0.29% 1661
chr14 503845 0.47% 2586
chr15 463423 0.45% 2401
chr16 511557 0.57% 2636
chr17 780571 0.94% 3981
chr18 248126 0.31% 1271
chr19 732090 1.25% 3702
chr20 372979 0.58% 1938
chr21 180283 0.39% 923
chr22 309568 0.61% 1611
chrX 488166 0.31% 2510
chrY 500 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 72453 1 1220 194.8 180
global segment-length histogram

Files

Filename Size md5
ENCFF844TKP.bed.gz 811.11 KB 69659b07f5d3d0fd1a6a76958c992480
ENCFF844TKP.tabix.bed.gz 747.02 KB e91dea6a8786f56ed235aceb58f60fa4
ENCFF844TKP.tabix.bed.gz.tbi 302.45 KB 0bb824e57dd61cc623a8960436674d01
genomic_resource.yaml 1.21 KB 02e57d12ed07325607cc01cc2080fe09
statistics/