Resource

Id DNase-seq/ENCSR300NZAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR300NZA [biosample_summary="Homo sapiens activated T-cell male adult (43 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours"]
Description
Labels
  • accession: ENCSR300NZA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000537/
  • biosample_summary: Homo sapiens activated T-cell male adult (43 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours
  • date_created: 2022-11-01T18:14:36.050447+00:00
  • date_released: 2022-12-01
  • doi: 10.17989/ENCSR300NZA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (43 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR300NZA float

DNase-seq_ENCSR300NZA
DNase-seq ENCSR300NZA [biosample_summary="Homo sapiens activated T-cell male adult (43 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR300NZA [0.0681, 43]
n
18,453,170
mean
3.2
sd
4.26

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 184531700.57% 93651
chr1 1826806 0.73% 9215
chr2 1364915 0.56% 7014
chr3 1067134 0.54% 5444
chr4 675651 0.36% 3495
chr5 861024 0.47% 4419
chr6 1102429 0.65% 5550
chr7 858446 0.54% 4423
chr8 763503 0.53% 3950
chr9 760592 0.55% 3846
chr10 859662 0.64% 4338
chr11 920699 0.68% 4702
chr12 915887 0.69% 4627
chr13 402227 0.35% 2048
chr14 634629 0.59% 3203
chr15 617579 0.61% 3148
chr16 715274 0.79% 3580
chr17 1062990 1.28% 5241
chr18 326034 0.41% 1685
chr19 996064 1.70% 4912
chr20 514129 0.80% 2617
chr21 225839 0.48% 1153
chr22 420590 0.83% 2128
chrX 534960 0.34% 2770
chrY 26107 0.05% 143
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 93651 1 940 197.04 180
global segment-length histogram

Files

Filename Size md5
ENCFF168GAN.bed.gz 1.01 MB a71b61c0afc4b266cc4ea00b4379ac48
ENCFF168GAN.tabix.bed.gz 951.42 KB 19207284381f8c2d3eee042ecdfd38c2
ENCFF168GAN.tabix.bed.gz.tbi 359.12 KB b25f3e48efe0ce44c50597d086602e18
genomic_resource.yaml 1.71 KB e528f2ce29cfe062ce40aa71e1541781
statistics/