Resource

Id DNase-seq/ENCSR299INScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR299INS [biosample_summary="Homo sapiens right lung tissue female embryo (105 days)"]
Description
Labels
  • accession: ENCSR299INS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002167/
  • biosample_summary: Homo sapiens right lung tissue female embryo (105 days)
  • date_created: 2015-09-16T21:42:52.460717+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR299INS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (105 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR299INS float

DNase-seq_ENCSR299INS
DNase-seq ENCSR299INS [biosample_summary="Homo sapiens right lung tissue female embryo (105 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR299INS [0.152, 25.4]
n
17,425,529
mean
2.74
sd
3.09

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 174255290.54% 84850
chr1 1539128 0.62% 7478
chr2 1423039 0.59% 6982
chr3 1134274 0.57% 5555
chr4 895933 0.47% 4368
chr5 979229 0.54% 4733
chr6 1080344 0.63% 5235
chr7 907804 0.57% 4482
chr8 805816 0.56% 3916
chr9 743932 0.54% 3608
chr10 865515 0.65% 4171
chr11 892695 0.66% 4341
chr12 850668 0.64% 4104
chr13 490654 0.43% 2409
chr14 533004 0.50% 2588
chr15 565298 0.55% 2748
chr16 536204 0.59% 2657
chr17 739189 0.89% 3604
chr18 400515 0.50% 1981
chr19 646207 1.10% 3017
chr20 427298 0.66% 2116
chr21 196877 0.42% 964
chr22 288339 0.57% 1424
chrX 483305 0.31% 2367
chrY 262 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 84850 1 980 205.37 200
global segment-length histogram

Files

Filename Size md5
ENCFF294DMF.bed.gz 899.72 KB e1a89729dbb4858f2e038450fb661501
ENCFF294DMF.tabix.bed.gz 819.16 KB 150409318bc5fbc27d988e8a24115e90
ENCFF294DMF.tabix.bed.gz.tbi 404.2 KB dd44325282afeda84f31fe06232cc509
genomic_resource.yaml 1.22 KB 9b04397864feaf5aaaf351c398fda7e5
statistics/