Resource

Id DNase-seq/ENCSR298SDTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR298SDT [biosample_summary="Homo sapiens thoracic aorta tissue male adult (37 years)"]
Description
Labels
  • accession: ENCSR298SDT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001515/
  • biosample_summary: Homo sapiens thoracic aorta tissue male adult (37 years)
  • date_created: 2019-10-08T17:48:09.231531+00:00
  • date_released: 2020-09-19
  • doi: 10.17989/ENCSR298SDT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR298SDT float

DNase-seq_ENCSR298SDT

DNase-seq ENCSR298SDT [biosample_summary="Homo sapiens thoracic aorta tissue male adult (37 years)"]
HISTOGRAM FOR DNase-seq_ENCSR298SDT [0.143, 16.9]
n
5,594,628
mean
2.51
sd
1.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 55946280.17% 31368
chr1 570628 0.23% 3206
chr2 398198 0.16% 2251
chr3 341004 0.17% 1920
chr4 207218 0.11% 1186
chr5 273930 0.15% 1566
chr6 294616 0.17% 1684
chr7 252674 0.16% 1411
chr8 212078 0.15% 1211
chr9 250100 0.18% 1412
chr10 266027 0.20% 1527
chr11 314036 0.23% 1763
chr12 291907 0.22% 1618
chr13 113704 0.10% 645
chr14 173700 0.16% 967
chr15 183311 0.18% 1027
chr16 218360 0.24% 1221
chr17 307229 0.37% 1701
chr18 92026 0.11% 528
chr19 350397 0.60% 1809
chr20 147619 0.23% 834
chr21 64393 0.14% 368
chr22 124080 0.24% 679
chrX 142121 0.09% 804
chrY 5272 0.01% 30
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 31368 4 680 178.35 180
global segment-length histogram

Files

Filename Size md5
ENCFF218NMI.bed.gz 343.82 KB 2885ada6baf28392c84c035fb672a9cd
ENCFF218NMI.tabix.bed.gz 309.95 KB ca7282baab861f8e61f00a7dec9377ad
ENCFF218NMI.tabix.bed.gz.tbi 181.96 KB 9d041c9feee04ecb4d83380e1cc6a102
genomic_resource.yaml 2.04 KB 104e13f89897d943f292b5941fbacfb9
statistics/