DNase-seq_ENCSR298SDT
DNase-seq ENCSR298SDT [biosample_summary="Homo sapiens thoracic aorta tissue male adult (37 years)"]
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| Id: | DNase-seq/ENCSR298SDT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR298SDT [biosample_summary="Homo sapiens thoracic aorta tissue male adult (37 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF818DQZ|/files/ENCFF818DQZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR298SDT | float |
DNase-seq_ENCSR298SDT |
DNase-seq ENCSR298SDT [biosample_summary="Homo sapiens thoracic aorta tissue male adult (37 years)"]
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[0.143, 16.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF218NMI.bed.gz | 343.82 KB | 2885ada6baf28392c84c035fb672a9cd |
| ENCFF218NMI.bed.gz.dvc | 100.0 B | 08f84f4f153fd42b7dda4408f4911c04 |
| ENCFF218NMI.tabix.bed.gz | 309.95 KB | ca7282baab861f8e61f00a7dec9377ad |
| ENCFF218NMI.tabix.bed.gz.dvc | 106.0 B | f0839d4586a05041a22ab166168539fd |
| ENCFF218NMI.tabix.bed.gz.tbi | 181.96 KB | 9d041c9feee04ecb4d83380e1cc6a102 |
| ENCFF218NMI.tabix.bed.gz.tbi.dvc | 110.0 B | 382e7e5151ecadecc9553a9d8904407a |
| genomic_resource.yaml | 2.04 KB | 104e13f89897d943f292b5941fbacfb9 |
| genomic_resource_original.yaml | 1.94 KB | 0bd94588e62fb26d230241ae9f80059d |
| statistics/ |