Resource
| Id | DNase-seq/ENCSR298SDT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR298SDT [biosample_summary="Homo sapiens thoracic aorta tissue male adult (37 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF818DQZ|/files/ENCFF818DQZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR298SDT | float |
DNase-seq_ENCSR298SDT |
DNase-seq ENCSR298SDT [biosample_summary="Homo sapiens thoracic aorta tissue male adult (37 years)"]
|
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[0.143, 16.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 5594628 | 0.17% | 31368 |
| chr1 | 570628 | 0.23% | 3206 |
| chr2 | 398198 | 0.16% | 2251 |
| chr3 | 341004 | 0.17% | 1920 |
| chr4 | 207218 | 0.11% | 1186 |
| chr5 | 273930 | 0.15% | 1566 |
| chr6 | 294616 | 0.17% | 1684 |
| chr7 | 252674 | 0.16% | 1411 |
| chr8 | 212078 | 0.15% | 1211 |
| chr9 | 250100 | 0.18% | 1412 |
| chr10 | 266027 | 0.20% | 1527 |
| chr11 | 314036 | 0.23% | 1763 |
| chr12 | 291907 | 0.22% | 1618 |
| chr13 | 113704 | 0.10% | 645 |
| chr14 | 173700 | 0.16% | 967 |
| chr15 | 183311 | 0.18% | 1027 |
| chr16 | 218360 | 0.24% | 1221 |
| chr17 | 307229 | 0.37% | 1701 |
| chr18 | 92026 | 0.11% | 528 |
| chr19 | 350397 | 0.60% | 1809 |
| chr20 | 147619 | 0.23% | 834 |
| chr21 | 64393 | 0.14% | 368 |
| chr22 | 124080 | 0.24% | 679 |
| chrX | 142121 | 0.09% | 804 |
| chrY | 5272 | 0.01% | 30 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 31368 | 4 | 680 | 178.35 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF218NMI.bed.gz | 343.82 KB | 2885ada6baf28392c84c035fb672a9cd |
| ENCFF218NMI.tabix.bed.gz | 309.95 KB | ca7282baab861f8e61f00a7dec9377ad |
| ENCFF218NMI.tabix.bed.gz.tbi | 181.96 KB | 9d041c9feee04ecb4d83380e1cc6a102 |
| genomic_resource.yaml | 2.04 KB | 104e13f89897d943f292b5941fbacfb9 |
| statistics/ |
