Resource

Id DNase-seq/ENCSR297WRGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR297WRG [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (90 or above years)"]
Description
Labels
  • accession: ENCSR297WRG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens head of caudate nucleus tissue female adult (90 or above years)
  • date_created: 2021-04-01T15:48:57.799408+00:00
  • date_released: 2021-06-17
  • doi: 10.17989/ENCSR297WRG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR297WRG float

DNase-seq_ENCSR297WRG

DNase-seq ENCSR297WRG [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (90 or above years)"]
HISTOGRAM FOR DNase-seq_ENCSR297WRG [0.0432, 40.8]
n
18,706,178
mean
2.7
sd
3.63

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 187061780.58% 99462
chr1 1741863 0.70% 9144
chr2 1435435 0.59% 7764
chr3 1041536 0.53% 5559
chr4 709869 0.37% 3733
chr5 880077 0.48% 4729
chr6 911859 0.53% 4849
chr7 933812 0.59% 4977
chr8 799798 0.55% 4293
chr9 842200 0.61% 4516
chr10 975634 0.73% 5187
chr11 1055972 0.78% 5611
chr12 858163 0.64% 4564
chr13 399495 0.35% 2127
chr14 612995 0.57% 3253
chr15 608098 0.60% 3265
chr16 750770 0.83% 3998
chr17 1027491 1.23% 5392
chr18 382960 0.48% 2037
chr19 944970 1.61% 4868
chr20 574492 0.89% 3058
chr21 230973 0.49% 1260
chr22 534080 1.05% 2868
chrX 452770 0.29% 2403
chrY 866 <0.01% 7
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 99462 2 880 188.07 180
global segment-length histogram

Files

Filename Size md5
ENCFF491FEU.bed.gz 1.08 MB 959322e5e422b356c9188e619aa2d9bd
ENCFF491FEU.tabix.bed.gz 1006.89 KB 6d907383d7fa9c4a8b1fec0b23a0341f
ENCFF491FEU.tabix.bed.gz.tbi 368.53 KB 11b5bdfa20bba635d3d1d1afe4a2987b
genomic_resource.yaml 1.31 KB b25d2e3a119b99d9ee6b22a5b990fed8
statistics/