DNase-seq_ENCSR297ORG
DNase-seq ENCSR297ORG [biosample_summary="Homo sapiens muscle of leg tissue male embryo (96 days)"]
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| Id: | DNase-seq/ENCSR297ORG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR297ORG [biosample_summary="Homo sapiens muscle of leg tissue male embryo (96 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (96 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN332FNN|/analyses/ENCAN332FNN/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF379QYU|/files/ENCFF379QYU/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 45762069 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF320WEE|/files/ENCFF320WEE/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 45519522 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR297ORG | float |
DNase-seq_ENCSR297ORG |
DNase-seq ENCSR297ORG [biosample_summary="Homo sapiens muscle of leg tissue male embryo (96 days)"]
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[3, 968] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF699XQF.bed.gz | 1.31 MB | efa2547d5fd6d51d66c874dec077fc42 |
| ENCFF699XQF.bed.gz.dvc | 101.0 B | b580b1ca5eb9bd746e7b3c17180b2ae4 |
| ENCFF699XQF.tabix.bed.gz | 1.13 MB | 128b754dfaf9fbcb674ec004e21ba20a |
| ENCFF699XQF.tabix.bed.gz.dvc | 107.0 B | 3fa5780b488dc89d44d09d7a3f4a3490 |
| ENCFF699XQF.tabix.bed.gz.tbi | 569.06 KB | 89bf101492cd4092d05807f0ba6cfec6 |
| ENCFF699XQF.tabix.bed.gz.tbi.dvc | 110.0 B | f974d6e4c9e0be320f89e195e761ea68 |
| genomic_resource.yaml | 2.59 KB | 2158f45be5e2d03619fae1686ef1df04 |
| genomic_resource_original.yaml | 2.49 KB | fa7e62ffc398906c099cac82cee7611a |
| statistics/ |