Resource

Id DNase-seq/ENCSR296TFHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR296TFH [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (24 years)"]
Description
Labels
  • accession: ENCSR296TFH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000900/
  • biosample_summary: Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (24 years)
  • date_created: 2020-05-11T17:50:16.347378+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR296TFH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (24 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR296TFH float

DNase-seq_ENCSR296TFH
DNase-seq ENCSR296TFH [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (24 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR296TFH [0.153, 100]
n
11,173,371
mean
8.54
sd
12.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 111733710.35% 58191
chr1 1121894 0.45% 5836
chr2 777701 0.32% 4094
chr3 588904 0.30% 3097
chr4 383970 0.20% 2014
chr5 490747 0.27% 2569
chr6 651426 0.38% 3389
chr7 527509 0.33% 2758
chr8 398293 0.27% 2114
chr9 444645 0.32% 2313
chr10 476590 0.36% 2500
chr11 581294 0.43% 3046
chr12 575325 0.43% 2975
chr13 226271 0.20% 1175
chr14 401557 0.38% 2069
chr15 350659 0.34% 1873
chr16 466869 0.52% 2404
chr17 683620 0.82% 3511
chr18 174543 0.22% 914
chr19 766292 1.31% 3855
chr20 315885 0.49% 1669
chr21 139376 0.30% 727
chr22 274770 0.54% 1436
chrX 344579 0.22% 1797
chrY 10652 0.02% 56
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 58191 1 840 192.01 180
global segment-length histogram

Files

Filename Size md5
ENCFF017WMK.bed.gz 654.59 KB d9544386fa9f9b487547e7d83c4731e6
ENCFF017WMK.tabix.bed.gz 597.73 KB 0be960b4f827b88c57a56d6e12cc1b31
ENCFF017WMK.tabix.bed.gz.tbi 249.94 KB 8c1914bc20522b2e3649f8f910d69e14
genomic_resource.yaml 1.32 KB 923c8c9723fdd18d2ddc2380aa41269c
statistics/