DNase-seq_ENCSR295DUI
DNase-seq ENCSR295DUI [biosample_summary="Homo sapiens left kidney tissue female embryo (87 days)"]
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| Id: | DNase-seq/ENCSR295DUI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR295DUI [biosample_summary="Homo sapiens left kidney tissue female embryo (87 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (87 days) output_type: peaks audit_warning: Alignment file {ENCFF078GPT|/files/ENCFF078GPT/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 46355646 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR295DUI | float |
DNase-seq_ENCSR295DUI |
DNase-seq ENCSR295DUI [biosample_summary="Homo sapiens left kidney tissue female embryo (87 days)"]
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[0.151, 20.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF142TGR.bed.gz | 876.18 KB | 62b38fa63fe1ff0c6f71d259df819f71 |
| ENCFF142TGR.bed.gz.dvc | 100.0 B | 9ad5053127322cf161481b474a40427e |
| ENCFF142TGR.tabix.bed.gz | 788.6 KB | 4db86637af8d81628e5bb670a6b30a4e |
| ENCFF142TGR.tabix.bed.gz.dvc | 106.0 B | f184963a0eedb129906cd8b859e3ba24 |
| ENCFF142TGR.tabix.bed.gz.tbi | 407.13 KB | 39732c15d73d3860d0af68ffd23f3dd4 |
| ENCFF142TGR.tabix.bed.gz.tbi.dvc | 110.0 B | 41804d10ae2c511aec8672775fac45ff |
| genomic_resource.yaml | 1.84 KB | 5db0764fee3d8b6d954ce7c40c4184e6 |
| genomic_resource_original.yaml | 1.74 KB | 9cfb22d2357fad48ef336a51ef490dd8 |
| statistics/ |