Resource

Id DNase-seq/ENCSR295DUIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR295DUI [biosample_summary="Homo sapiens left kidney tissue female embryo (87 days)"]
Description
Labels
  • accession: ENCSR295DUI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004538/
  • biosample_summary: Homo sapiens left kidney tissue female embryo (87 days)
  • date_created: 2015-09-16T21:43:04.961805+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR295DUI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (87 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR295DUI float

DNase-seq_ENCSR295DUI

DNase-seq ENCSR295DUI [biosample_summary="Homo sapiens left kidney tissue female embryo (87 days)"]
HISTOGRAM FOR DNase-seq_ENCSR295DUI [0.151, 20.6]
n
15,344,779
mean
2.29
sd
2.28

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 153447790.48% 82732
chr1 1378485 0.55% 7413
chr2 1211742 0.50% 6587
chr3 984295 0.50% 5270
chr4 823846 0.43% 4465
chr5 854665 0.47% 4595
chr6 930574 0.54% 4991
chr7 790935 0.50% 4311
chr8 701951 0.48% 3783
chr9 644839 0.47% 3466
chr10 752067 0.56% 4086
chr11 777880 0.58% 4180
chr12 758971 0.57% 4112
chr13 399426 0.35% 2172
chr14 506118 0.47% 2682
chr15 508283 0.50% 2724
chr16 488993 0.54% 2657
chr17 639362 0.77% 3414
chr18 359127 0.45% 1947
chr19 600821 1.02% 3065
chr20 374616 0.58% 2082
chr21 167682 0.36% 917
chr22 252890 0.50% 1376
chrX 436531 0.28% 2432
chrY 680 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 82732 2 900 185.48 180
global segment-length histogram

Files

Filename Size md5
ENCFF142TGR.bed.gz 876.18 KB 62b38fa63fe1ff0c6f71d259df819f71
ENCFF142TGR.tabix.bed.gz 788.6 KB 4db86637af8d81628e5bb670a6b30a4e
ENCFF142TGR.tabix.bed.gz.tbi 407.13 KB 39732c15d73d3860d0af68ffd23f3dd4
genomic_resource.yaml 1.84 KB 5db0764fee3d8b6d954ce7c40c4184e6
statistics/