Resource

Id DNase-seq/ENCSR294YEJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR294YEJ [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours"]
Description
Labels
  • accession: ENCSR294YEJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000906/
  • biosample_summary: Homo sapiens activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours
  • date_created: 2019-08-24T00:09:41.097554+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR294YEJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR294YEJ float

DNase-seq_ENCSR294YEJ
DNase-seq ENCSR294YEJ [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR294YEJ [0.0547, 73]
n
23,518,016
mean
3.9
sd
6.17

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 235180160.73% 130270
chr1 2303951 0.93% 12690
chr2 1745030 0.72% 9760
chr3 1327505 0.67% 7415
chr4 882475 0.46% 4959
chr5 1094786 0.60% 6168
chr6 1374504 0.80% 7646
chr7 1130917 0.71% 6377
chr8 948868 0.65% 5326
chr9 965276 0.70% 5337
chr10 1092261 0.82% 6125
chr11 1177949 0.87% 6488
chr12 1143300 0.86% 6355
chr13 516401 0.45% 2905
chr14 813152 0.76% 4492
chr15 778949 0.76% 4342
chr16 946091 1.05% 5128
chr17 1294976 1.56% 6962
chr18 445733 0.55% 2505
chr19 1258815 2.15% 6635
chr20 670747 1.04% 3732
chr21 302518 0.65% 1676
chr22 570840 1.12% 3115
chrX 703185 0.45% 3948
chrY 29787 0.05% 184
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 130270 4 740 180.53 180
global segment-length histogram

Files

Filename Size md5
ENCFF159OCV.bed.gz 1.43 MB e04d1dc4471e7a8fc237cf4e56e9b98f
ENCFF159OCV.tabix.bed.gz 1.3 MB 4fdbc624677130c8bd90f97a342ce583
ENCFF159OCV.tabix.bed.gz.tbi 438.62 KB b36b0ca1a7e5c4e7d800d9224e0cd9cc
genomic_resource.yaml 1.6 KB d2b98b8b56323c6562e257fa19e9a1cd
statistics/