Resource
| Id | DNase-seq/ENCSR294QCR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR294QCR [biosample_summary="Homo sapiens muscle of leg tissue male embryo (97 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (97 days) output_type: peaks audit_warning: Alignment file {ENCFF288MMS|/files/ENCFF288MMS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 28359535 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR294QCR | float |
DNase-seq_ENCSR294QCR |
DNase-seq ENCSR294QCR [biosample_summary="Homo sapiens muscle of leg tissue male embryo (97 days)"]
|
![]() |
[0.247, 28.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 10465370 | 0.33% | 58491 |
| chr1 | 938518 | 0.38% | 5238 |
| chr2 | 863822 | 0.36% | 4853 |
| chr3 | 704307 | 0.36% | 3954 |
| chr4 | 538596 | 0.28% | 3056 |
| chr5 | 586860 | 0.32% | 3279 |
| chr6 | 654401 | 0.38% | 3620 |
| chr7 | 530047 | 0.33% | 2994 |
| chr8 | 502745 | 0.35% | 2831 |
| chr9 | 452597 | 0.33% | 2525 |
| chr10 | 497676 | 0.37% | 2816 |
| chr11 | 533620 | 0.40% | 2964 |
| chr12 | 530125 | 0.40% | 2965 |
| chr13 | 313494 | 0.27% | 1737 |
| chr14 | 337364 | 0.32% | 1891 |
| chr15 | 332646 | 0.33% | 1855 |
| chr16 | 312513 | 0.35% | 1757 |
| chr17 | 399148 | 0.48% | 2241 |
| chr18 | 224069 | 0.28% | 1273 |
| chr19 | 398228 | 0.68% | 2040 |
| chr20 | 258639 | 0.40% | 1467 |
| chr21 | 116122 | 0.25% | 652 |
| chr22 | 165811 | 0.33% | 948 |
| chrX | 265837 | 0.17% | 1486 |
| chrY | 8185 | 0.01% | 49 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 58491 | 4 | 880 | 178.92 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF834MZK.bed.gz | 623.48 KB | 693b607f7e1564c915b65ec5c4e079c0 |
| ENCFF834MZK.tabix.bed.gz | 551.79 KB | ccd339a48e1cea6486668475c9d70549 |
| ENCFF834MZK.tabix.bed.gz.tbi | 332.28 KB | 5aa9c2ba91f141d86915edcd6362c486 |
| genomic_resource.yaml | 1.83 KB | 6cf90660dc20a518fb2e8825fb6ab4f3 |
| statistics/ |
