DNase-seq_ENCSR291HMM
DNase-seq ENCSR291HMM [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell"]
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| Id: | DNase-seq/ENCSR291HMM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR291HMM [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF442AXX|/files/ENCFF442AXX/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR291HMM | float |
DNase-seq_ENCSR291HMM |
DNase-seq ENCSR291HMM [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell"]
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[0.0665, 27.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF386GNZ.bed.gz | 781.74 KB | 5632cb40414ab68f4b3de2628ebfd75c |
| ENCFF386GNZ.bed.gz.dvc | 100.0 B | 65af3b0888f84c0739884e8e7d7acc3c |
| ENCFF386GNZ.tabix.bed.gz | 735.82 KB | f8fafd6e3d196d5b81b89fa3a20f7d45 |
| ENCFF386GNZ.tabix.bed.gz.dvc | 106.0 B | 9390ab06202c8c707866c1a19b05e3e1 |
| ENCFF386GNZ.tabix.bed.gz.tbi | 292.6 KB | 002b92a6049f26befac2ecfb33bec147 |
| ENCFF386GNZ.tabix.bed.gz.tbi.dvc | 110.0 B | 756e300a8c722a10b58dfe59a23caa96 |
| genomic_resource.yaml | 2.05 KB | e8092bb551c7b8da8920b7f897701a4e |
| genomic_resource_original.yaml | 1.94 KB | 3e5aaba30653a2a9429881873c139586 |
| statistics/ |