DNase-seq_ENCSR290NGL
DNase-seq ENCSR290NGL [biosample_summary="Homo sapiens T-cell female adult (32 years)"]
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| Id: | DNase-seq/ENCSR290NGL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR290NGL [biosample_summary="Homo sapiens T-cell female adult (32 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (32 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF728ZLL|/files/ENCFF728ZLL/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR290NGL | float |
DNase-seq_ENCSR290NGL |
DNase-seq ENCSR290NGL [biosample_summary="Homo sapiens T-cell female adult (32 years)"]
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[0.105, 33] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF409NJS.bed.gz | 385.63 KB | a4860dcc17560af4f8a908781207d592 |
| ENCFF409NJS.bed.gz.dvc | 100.0 B | f9ce1238387fc0028b319ac2f55205df |
| ENCFF409NJS.tabix.bed.gz | 351.01 KB | ee45589b883d2618334dab989f10c17b |
| ENCFF409NJS.tabix.bed.gz.dvc | 106.0 B | 19103a52963896759db64ea5793ca1c6 |
| ENCFF409NJS.tabix.bed.gz.tbi | 182.64 KB | 01d8efb25d125e13f3d706a6abf660f2 |
| ENCFF409NJS.tabix.bed.gz.tbi.dvc | 110.0 B | 1ce2937bfef7139799c4a89d6d1bd615 |
| genomic_resource.yaml | 2.01 KB | cb7c031a4cefba0cbff3e6b461e72594 |
| genomic_resource_original.yaml | 1.91 KB | bc886ee39acd0fa28a0b9a1ae57089df |
| statistics/ |