DNase-seq_ENCSR289GZQ
DNase-seq ENCSR289GZQ [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (38 years)"]
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| Id: | DNase-seq/ENCSR289GZQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR289GZQ [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (38 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF822DKY|/files/ENCFF822DKY/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR289GZQ | float |
DNase-seq_ENCSR289GZQ |
DNase-seq ENCSR289GZQ [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (38 years)"]
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[0.0713, 20.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF652LBN.bed.gz | 683.26 KB | 1a8a59f01a85e10a40d4748422aed2d0 |
| ENCFF652LBN.bed.gz.dvc | 100.0 B | c8949c858671b5de1e8d08dbc7114362 |
| ENCFF652LBN.tabix.bed.gz | 631.49 KB | e8a5e2ae0dcb47f9e33993537768c460 |
| ENCFF652LBN.tabix.bed.gz.dvc | 106.0 B | 4b49b7a20e146cf1e98085ad995a8fd2 |
| ENCFF652LBN.tabix.bed.gz.tbi | 184.29 KB | 59f82fcc9e23a501469cec0fe25e6bf1 |
| ENCFF652LBN.tabix.bed.gz.tbi.dvc | 110.0 B | b1eda2e9f10a2dc15ea2858cff2ce69e |
| genomic_resource.yaml | 2.08 KB | ba45c23b5252a542b544e852173652e3 |
| genomic_resource_original.yaml | 1.96 KB | c9ff2ad0a4bf342280a6779a5200b5b7 |
| statistics/ |