| Id: | DNase-seq/ENCSR287GYT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR287GYT [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF046LCT|/files/ENCFF046LCT/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30259596 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR287GYT | float |
DNase-seq_ENCSR287GYT |
DNase-seq ENCSR287GYT [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours"]
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[0.331, 58.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF160XWV.bed.gz | 427.58 KB | bbbcef61b280ded36fb30ef685f4496e |
| ENCFF160XWV.bed.gz.dvc | 100.0 B | 977900ca58235d8a3b01cb2a8fdb611b |
| ENCFF160XWV.tabix.bed.gz | 385.92 KB | fb25b0e5559d388297e85d91f4258fb8 |
| ENCFF160XWV.tabix.bed.gz.dvc | 106.0 B | dcb43e9076a8071029d4a7e9f634296c |
| ENCFF160XWV.tabix.bed.gz.tbi | 203.2 KB | d953463ec10a5aef145e83e2d3d60ef9 |
| ENCFF160XWV.tabix.bed.gz.tbi.dvc | 110.0 B | b07b5405cc685af2efc8020322056bc3 |
| genomic_resource.yaml | 2.41 KB | ebb5ba8d53eed32e999299f1a1c70202 |
| genomic_resource_original.yaml | 2.19 KB | d2260cb7c778819af63a02d2d883a61f |
| statistics/ |