Resource

Id DNase-seq/ENCSR287GYTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR287GYT [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours"]
Description
Labels
  • accession: ENCSR287GYT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours
  • date_created: 2020-04-20T23:46:04.632708+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR287GYT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR287GYT float

DNase-seq_ENCSR287GYT
DNase-seq ENCSR287GYT [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR287GYT [0.331, 58.5]
n
7,027,578
mean
7.01
sd
7.22

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 70275780.22% 38881
chr1 722509 0.29% 4005
chr2 497056 0.21% 2773
chr3 382596 0.19% 2094
chr4 242729 0.13% 1346
chr5 303046 0.17% 1685
chr6 416082 0.24% 2300
chr7 321272 0.20% 1794
chr8 257166 0.18% 1427
chr9 279959 0.20% 1554
chr10 306456 0.23% 1722
chr11 359581 0.27% 1995
chr12 367949 0.28% 2020
chr13 138573 0.12% 767
chr14 248349 0.23% 1364
chr15 225889 0.22% 1260
chr16 291718 0.32% 1599
chr17 430041 0.52% 2386
chr18 104090 0.13% 581
chr19 486787 0.83% 2595
chr20 199955 0.31% 1128
chr21 78500 0.17% 438
chr22 169992 0.33% 952
chrX 190467 0.12% 1060
chrY 6816 0.01% 36
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 38881 2 660 180.75 180
global segment-length histogram

Files

Filename Size md5
ENCFF160XWV.bed.gz 427.58 KB bbbcef61b280ded36fb30ef685f4496e
ENCFF160XWV.tabix.bed.gz 385.92 KB fb25b0e5559d388297e85d91f4258fb8
ENCFF160XWV.tabix.bed.gz.tbi 203.2 KB d953463ec10a5aef145e83e2d3d60ef9
genomic_resource.yaml 2.41 KB ebb5ba8d53eed32e999299f1a1c70202
statistics/