| Id: | DNase-seq/ENCSR284VNJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR284VNJ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-15 for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-15 for 24 hours output_type: peaks audit_warning: Alignment file {ENCFF433CPM|/files/ENCFF433CPM/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30545942 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR284VNJ | float |
DNase-seq_ENCSR284VNJ |
DNase-seq ENCSR284VNJ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-15 for 24 hours"]
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[0.394, 24] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF306PBD.bed.gz | 313.91 KB | 080a83dcf2068d55d56db236ccdbd134 |
| ENCFF306PBD.bed.gz.dvc | 100.0 B | f18f023bd813c9805a1b083d96e3215c |
| ENCFF306PBD.tabix.bed.gz | 285.16 KB | 8d5f320de917eca0fa8308c445fc5016 |
| ENCFF306PBD.tabix.bed.gz.dvc | 106.0 B | badd98332cccec602b6d427715397251 |
| ENCFF306PBD.tabix.bed.gz.tbi | 162.78 KB | f4291b23d4a37ca1782935ac7ebf17a1 |
| ENCFF306PBD.tabix.bed.gz.tbi.dvc | 110.0 B | 3d565b97e3bdc51dcaee2308a00bfa85 |
| genomic_resource.yaml | 2.46 KB | 6be173a779208f2804672955af076a4a |
| genomic_resource_original.yaml | 2.23 KB | 8ad5884fd8e83b0f99d513874639e6c8 |
| statistics/ |