Resource

Id DNase-seq/ENCSR284VNJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR284VNJ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-15 for 24 hours"]
Description
Labels
  • accession: ENCSR284VNJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-15 for 24 hours
  • date_created: 2020-04-20T23:45:30.759123+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR284VNJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-15 for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR284VNJ float

DNase-seq_ENCSR284VNJ
DNase-seq ENCSR284VNJ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-15 for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR284VNJ [0.394, 24]
n
5,821,686
mean
4.68
sd
3.21

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 58216860.18% 29142
chr1 603753 0.24% 2985
chr2 389423 0.16% 1936
chr3 321851 0.16% 1585
chr4 202632 0.11% 986
chr5 255442 0.14% 1265
chr6 332772 0.19% 1648
chr7 269498 0.17% 1341
chr8 205403 0.14% 1045
chr9 241509 0.17% 1208
chr10 242010 0.18% 1240
chr11 309783 0.23% 1553
chr12 296791 0.22% 1487
chr13 120152 0.11% 582
chr14 204305 0.19% 1028
chr15 189855 0.19% 976
chr16 254613 0.28% 1288
chr17 352806 0.42% 1789
chr18 83874 0.10% 429
chr19 433447 0.74% 2151
chr20 161742 0.25% 838
chr21 60811 0.13% 319
chr22 138834 0.27% 711
chrX 145268 0.09% 732
chrY 5112 0.01% 20
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29142 8 797 199.77 193
global segment-length histogram

Files

Filename Size md5
ENCFF306PBD.bed.gz 313.91 KB 080a83dcf2068d55d56db236ccdbd134
ENCFF306PBD.tabix.bed.gz 285.16 KB 8d5f320de917eca0fa8308c445fc5016
ENCFF306PBD.tabix.bed.gz.tbi 162.78 KB f4291b23d4a37ca1782935ac7ebf17a1
genomic_resource.yaml 2.46 KB 6be173a779208f2804672955af076a4a
statistics/