| Id: | DNase-seq/ENCSR284GAG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR284GAG [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF137RGN|/files/ENCFF137RGN/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 29729274 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR284GAG | float |
DNase-seq_ENCSR284GAG |
DNase-seq ENCSR284GAG [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours"]
|
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[0.371, 40.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF864RTV.bed.gz | 349.32 KB | b4df654a6bd1eedf9972f4f6211af281 |
| ENCFF864RTV.bed.gz.dvc | 100.0 B | dde002a7c47e2e8c98d66252e49ab95c |
| ENCFF864RTV.tabix.bed.gz | 315.41 KB | 1f23e43ce74476cbdada698fdecc7919 |
| ENCFF864RTV.tabix.bed.gz.dvc | 106.0 B | 5bfbed69e8c9eecd470aa931f5c6dc93 |
| ENCFF864RTV.tabix.bed.gz.tbi | 178.77 KB | 16f44ff9d130760786aabd38970ad71b |
| ENCFF864RTV.tabix.bed.gz.tbi.dvc | 110.0 B | 743fad62e9b48ae2306f652fcbb3d81f |
| genomic_resource.yaml | 2.43 KB | 8dc50f101077d5d381525a919c51c845 |
| genomic_resource_original.yaml | 2.21 KB | 278333567f5900c7706bc77ade3f5bf4 |
| statistics/ |