Resource

Id DNase-seq/ENCSR283MZJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR283MZJ [biosample_summary="Homo sapiens T-cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR283MZJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (33 years)
  • date_created: 2020-04-18T05:18:58.544908+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR283MZJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR283MZJ float

DNase-seq_ENCSR283MZJ

DNase-seq ENCSR283MZJ [biosample_summary="Homo sapiens T-cell female adult (33 years)"]
HISTOGRAM FOR DNase-seq_ENCSR283MZJ [0.149, 112]
n
10,963,680
mean
8.63
sd
11.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 109636800.34% 58827
chr1 1091744 0.44% 5881
chr2 770513 0.32% 4145
chr3 590868 0.30% 3128
chr4 369731 0.19% 1973
chr5 482396 0.27% 2587
chr6 626721 0.37% 3370
chr7 509177 0.32% 2750
chr8 394978 0.27% 2169
chr9 437478 0.32% 2360
chr10 496313 0.37% 2658
chr11 563344 0.42% 3033
chr12 551589 0.41% 2962
chr13 223181 0.20% 1192
chr14 388553 0.36% 2060
chr15 355765 0.35% 1932
chr16 458402 0.51% 2477
chr17 678673 0.82% 3602
chr18 177396 0.22% 962
chr19 729964 1.25% 3785
chr20 316329 0.49% 1741
chr21 135387 0.29% 730
chr22 273587 0.54% 1478
chrX 341591 0.22% 1852
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 58827 5 700 186.37 180
global segment-length histogram

Files

Filename Size md5
ENCFF300QNV.bed.gz 660.58 KB d0eeed0fa4263bd3db2714ca6f4b690e
ENCFF300QNV.tabix.bed.gz 603.12 KB ee1041fea84942c747b39b00fd2941cb
ENCFF300QNV.tabix.bed.gz.tbi 250.83 KB 2c2b9781cc87b7dfe61d72347eca062b
genomic_resource.yaml 1.19 KB ea66d04ff1e6b6cdddef207d4bfb83a7
statistics/