DNase-seq_ENCSR281HBB
DNase-seq ENCSR281HBB [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male adult (49 years)"]
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| Id: | DNase-seq/ENCSR281HBB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR281HBB [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male adult (49 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (49 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN534XXT|/analyses/ENCAN534XXT/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF265ZUN|/files/ENCFF265ZUN/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 35318388 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF672QYE|/files/ENCFF672QYE/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 35004897 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF672QYE|/files/ENCFF672QYE/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/}) for GRCh38 assembly have a SPOT1 score of 0.40. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR281HBB | float |
DNase-seq_ENCSR281HBB |
DNase-seq ENCSR281HBB [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male adult (49 years)"]
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[4, 4.93e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF111XGH.bed.gz | 856.35 KB | b8207d2f78b19638f25a57896d9ed84d |
| ENCFF111XGH.bed.gz.dvc | 100.0 B | 227a79939fcafdd9284a4a3864d772fc |
| ENCFF111XGH.tabix.bed.gz | 741.34 KB | 168d4a2e8f161c7371cde30efbaea559 |
| ENCFF111XGH.tabix.bed.gz.dvc | 106.0 B | 8bcfd579172795189ca604cd1567931f |
| ENCFF111XGH.tabix.bed.gz.tbi | 428.0 KB | bb445dcc59c33a89e1a17542059d243c |
| ENCFF111XGH.tabix.bed.gz.tbi.dvc | 110.0 B | 76806490c4569066c0adbeaa2b9ace89 |
| genomic_resource.yaml | 3.46 KB | 900b3b6748a75f2ae30bcdbc48828f0a |
| genomic_resource_original.yaml | 3.34 KB | 37de91793b78958847d48c92e17667a2 |
| statistics/ |