DNase-seq_ENCSR278FVO
DNase-seq ENCSR278FVO [biosample_summary="Homo sapiens neuronal stem cell originated from H1"]
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| Id: | DNase-seq/ENCSR278FVO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR278FVO [biosample_summary="Homo sapiens neuronal stem cell originated from H1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF224MAE|/files/ENCFF224MAE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.26. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR278FVO | float |
DNase-seq_ENCSR278FVO |
DNase-seq ENCSR278FVO [biosample_summary="Homo sapiens neuronal stem cell originated from H1"]
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[0.125, 23.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF732IUC.bed.gz | 756.84 KB | dda8c873833deaed89187ce953ee54c0 |
| ENCFF732IUC.bed.gz.dvc | 100.0 B | d270dc6753d27f8b501130b24d38b530 |
| ENCFF732IUC.tabix.bed.gz | 696.23 KB | 4d30f65a8403b3c97e0061ea43662aa8 |
| ENCFF732IUC.tabix.bed.gz.dvc | 106.0 B | c521533375e6142e33eb483885f6c3c1 |
| ENCFF732IUC.tabix.bed.gz.tbi | 353.42 KB | 42a8a33c68c7a71b153f97db1834e7b9 |
| ENCFF732IUC.tabix.bed.gz.tbi.dvc | 110.0 B | fe41db826c0fc1ec6fb58c2281590d53 |
| genomic_resource.yaml | 2.02 KB | a0a5538a350ed51cf540621e9b8ef95c |
| genomic_resource_original.yaml | 1.92 KB | 8caf6aa60d8438e7e9e1d0369858f2c7 |
| statistics/ |