Resource

Id DNase-seq/ENCSR277ZHXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR277ZHX [biosample_summary="Homo sapiens CD14-positive monocyte male adult (40 years)"]
Description
Labels
  • accession: ENCSR277ZHX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0001054/
  • biosample_summary: Homo sapiens CD14-positive monocyte male adult (40 years)
  • date_created: 2018-11-29T17:34:35.593781+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR277ZHX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (40 years)
  • status: released
  • submitter_comment: This dataset was originally submitted with 2 anisogenic replicates. The second replicate has been moved to ENCSR464ETX.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR277ZHX float

DNase-seq_ENCSR277ZHX

DNase-seq ENCSR277ZHX [biosample_summary="Homo sapiens CD14-positive monocyte male adult (40 years)"]
HISTOGRAM FOR DNase-seq_ENCSR277ZHX [0.0197, 15.1]
n
22,372,598
mean
1.61
sd
1.76

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 223725980.70% 117093
chr1 2216588 0.89% 11694
chr2 1734612 0.72% 9167
chr3 1401684 0.71% 7374
chr4 903622 0.48% 4758
chr5 1135154 0.63% 6001
chr6 1388693 0.81% 7295
chr7 1028876 0.65% 5415
chr8 943146 0.65% 4946
chr9 914256 0.66% 4791
chr10 1049700 0.78% 5506
chr11 1129664 0.84% 5882
chr12 1207871 0.91% 6284
chr13 491313 0.43% 2602
chr14 703565 0.66% 3648
chr15 749969 0.74% 3948
chr16 747094 0.83% 3906
chr17 1165101 1.40% 5998
chr18 435975 0.54% 2282
chr19 995498 1.70% 5008
chr20 658220 1.02% 3422
chr21 276681 0.59% 1436
chr22 454853 0.90% 2362
chrX 615850 0.39% 3235
chrY 24613 0.04% 133
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 117093 1 820 191.07 180
global segment-length histogram

Files

Filename Size md5
ENCFF531CKE.bed.gz 1.28 MB 9b203ca5356c39efe433a5f6b90a08e8
ENCFF531CKE.tabix.bed.gz 1.17 MB 3d3df4331e52fe8a495c72c422952acc
ENCFF531CKE.tabix.bed.gz.tbi 359.03 KB 1277a27431c92975cab066d36931d736
genomic_resource.yaml 2.16 KB fb6fe3b5f1e1542cd362c3f6b1ad51bb
statistics/