DNase-seq_ENCSR277ZHX
DNase-seq ENCSR277ZHX [biosample_summary="Homo sapiens CD14-positive monocyte male adult (40 years)"]
×
| Id: | DNase-seq/ENCSR277ZHX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR277ZHX [biosample_summary="Homo sapiens CD14-positive monocyte male adult (40 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (40 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF185URC|/files/ENCFF185URC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR277ZHX | float |
DNase-seq_ENCSR277ZHX |
DNase-seq ENCSR277ZHX [biosample_summary="Homo sapiens CD14-positive monocyte male adult (40 years)"]
|
|
[0.0197, 15.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF531CKE.bed.gz | 1.28 MB | 9b203ca5356c39efe433a5f6b90a08e8 |
| ENCFF531CKE.bed.gz.dvc | 101.0 B | fa691b66e3008f6bce6a47096759a314 |
| ENCFF531CKE.tabix.bed.gz | 1.17 MB | 3d3df4331e52fe8a495c72c422952acc |
| ENCFF531CKE.tabix.bed.gz.dvc | 107.0 B | 95cc97e2b5ee8ea9042b8d6ac761cd07 |
| ENCFF531CKE.tabix.bed.gz.tbi | 359.03 KB | 1277a27431c92975cab066d36931d736 |
| ENCFF531CKE.tabix.bed.gz.tbi.dvc | 110.0 B | c763810f03ee7e3666f68e3758c29dc8 |
| genomic_resource.yaml | 2.16 KB | fb6fe3b5f1e1542cd362c3f6b1ad51bb |
| genomic_resource_original.yaml | 2.06 KB | 458c99b5b71099e6093ddc7cfba5a4d6 |
| statistics/ |