DNase-seq_ENCSR276MDV
DNase-seq ENCSR276MDV [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (87 years)"]
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| Id: | DNase-seq/ENCSR276MDV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR276MDV [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (87 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (87 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF595CQR|/files/ENCFF595CQR/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR276MDV | float |
DNase-seq_ENCSR276MDV |
DNase-seq ENCSR276MDV [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (87 years)"]
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[0.0761, 21.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF290LOQ.bed.gz | 814.71 KB | 70f964fa4e2ba33799b45d7f3de202dc |
| ENCFF290LOQ.bed.gz.dvc | 100.0 B | 620ee5899953fff411eb386c2b3d03fe |
| ENCFF290LOQ.tabix.bed.gz | 738.9 KB | 0d03f006b22b83138cf5a63231db7d99 |
| ENCFF290LOQ.tabix.bed.gz.dvc | 106.0 B | 407365093b466229dcb4e271383d0c5c |
| ENCFF290LOQ.tabix.bed.gz.tbi | 305.36 KB | 6cec8a269660a1561929bb3c917ecb4a |
| ENCFF290LOQ.tabix.bed.gz.tbi.dvc | 110.0 B | 46f805ea7e5e0ec313a4ac6253828e6c |
| genomic_resource.yaml | 2.06 KB | bdd2f1b5ac8341c98edb8e9f83aee8a9 |
| genomic_resource_original.yaml | 1.95 KB | 25ac6b405072894632be708c67d57267 |
| statistics/ |