| Id: | DNase-seq/ENCSR274FZD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR274FZD [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Cognitive impairment, Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF773CBJ|/files/ENCFF773CBJ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR274FZD | float |
DNase-seq_ENCSR274FZD |
DNase-seq ENCSR274FZD [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
|
 |
[0.0676, 18.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF601IBY.bed.gz | 700.37 KB | 60149ae6d2dc0fa2645cef26fc3c55dd |
| ENCFF601IBY.bed.gz.dvc | 100.0 B | 0d4cedfc4558a73645e1f35ee557128a |
| ENCFF601IBY.tabix.bed.gz | 635.3 KB | f8cc4e43fb0bf21b396078bd983baab4 |
| ENCFF601IBY.tabix.bed.gz.dvc | 106.0 B | f7add260554d262bc59508233422b401 |
| ENCFF601IBY.tabix.bed.gz.tbi | 259.85 KB | 7ae6bc7ba4053da033910139fdf85d14 |
| ENCFF601IBY.tabix.bed.gz.tbi.dvc | 110.0 B | 0b4976dffc797b41e7e199ee3b8c3a2b |
| genomic_resource.yaml | 2.37 KB | da28ab4a40cfe3696bf11a25214a1915 |
| genomic_resource_original.yaml | 2.2 KB | 806e5d794d8bee3c3850c22e62362727 |
| statistics/ |