| Id: | DNase-seq/ENCSR273USD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR273USD [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours output_type: peaks audit_warning: Alignment file {ENCFF336SGK|/files/ENCFF336SGK/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 28540426 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR273USD | float |
DNase-seq_ENCSR273USD |
DNase-seq ENCSR273USD [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours"]
|
 |
[0.316, 50.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF965IJZ.bed.gz | 500.1 KB | bc24fba0acfbacb3a3b31a27c4634721 |
| ENCFF965IJZ.bed.gz.dvc | 100.0 B | 6a90f609ea4d0e770437ed083a70d16e |
| ENCFF965IJZ.tabix.bed.gz | 453.25 KB | 3090ebacb63fa707cb47594f19f2cb77 |
| ENCFF965IJZ.tabix.bed.gz.dvc | 106.0 B | 01dc38e58b762ccb1189bebd8e419f20 |
| ENCFF965IJZ.tabix.bed.gz.tbi | 231.89 KB | 2e314f996d8f7ce000cf41ec338b1546 |
| ENCFF965IJZ.tabix.bed.gz.tbi.dvc | 110.0 B | 4117203453fd5b5b48edf8299df99403 |
| genomic_resource.yaml | 2.21 KB | 18ff20c7ce114ce3a0a35144267fc7e6 |
| genomic_resource_original.yaml | 2.04 KB | 00a140a1338ca7d0fc3ded94c1846e9f |
| statistics/ |