DNase-seq_ENCSR271QID
DNase-seq ENCSR271QID [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR271QID |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR271QID [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF751SHB|/files/ENCFF751SHB/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR271QID | float |
DNase-seq_ENCSR271QID |
DNase-seq ENCSR271QID [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
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[0.0674, 13.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF651ZKO.bed.gz | 686.91 KB | 1e24e3b06352880a24fb7d60270978aa |
| ENCFF651ZKO.bed.gz.dvc | 100.0 B | e9b88aef9ed1aad701fc15b02badc7c1 |
| ENCFF651ZKO.tabix.bed.gz | 625.85 KB | 30a05178b4f4fc2b4f65c53742414bd9 |
| ENCFF651ZKO.tabix.bed.gz.dvc | 106.0 B | 1e441168b874490659aa91fd61c477e5 |
| ENCFF651ZKO.tabix.bed.gz.tbi | 273.76 KB | 89c1d5433118ee73f81fe4c182b48636 |
| ENCFF651ZKO.tabix.bed.gz.tbi.dvc | 110.0 B | b99d245dd7edc58ccef95f510ee852d5 |
| genomic_resource.yaml | 2.28 KB | 86bd7d0e027843e5abb8c1985de23401 |
| genomic_resource_original.yaml | 2.12 KB | db6a7093de3978527365b6079f107eee |
| statistics/ |