Resource

Id DNase-seq/ENCSR270JQKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR270JQK [biosample_summary="Homo sapiens T-cell female adult (40 years)"]
Description
Labels
  • accession: ENCSR270JQK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (40 years)
  • date_created: 2020-04-12T18:59:13.654308+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR270JQK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (40 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR270JQK float

DNase-seq_ENCSR270JQK

DNase-seq ENCSR270JQK [biosample_summary="Homo sapiens T-cell female adult (40 years)"]
HISTOGRAM FOR DNase-seq_ENCSR270JQK [0.383, 65.3]
n
7,219,169
mean
7.51
sd
8.19

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 72191690.22% 39074
chr1 738528 0.30% 3998
chr2 493735 0.20% 2662
chr3 387992 0.20% 2083
chr4 246309 0.13% 1319
chr5 310391 0.17% 1706
chr6 416239 0.24% 2240
chr7 332581 0.21% 1836
chr8 257724 0.18% 1405
chr9 290856 0.21% 1584
chr10 318792 0.24% 1739
chr11 372378 0.28% 2037
chr12 363063 0.27% 1960
chr13 139542 0.12% 741
chr14 252147 0.24% 1351
chr15 231708 0.23% 1261
chr16 306214 0.34% 1659
chr17 449569 0.54% 2430
chr18 111094 0.14% 610
chr19 525752 0.90% 2752
chr20 207828 0.32% 1149
chr21 80962 0.17% 452
chr22 179932 0.35% 990
chrX 205833 0.13% 1110
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 39074 5 780 184.76 180
global segment-length histogram

Files

Filename Size md5
ENCFF696CWC.bed.gz 436.85 KB ed239e505b11692b40af0b632738257a
ENCFF696CWC.tabix.bed.gz 395.53 KB 991de99e2e9e3e043ee391c538107633
ENCFF696CWC.tabix.bed.gz.tbi 201.84 KB 7414fbbd813e52255dcbc45a1da62f71
genomic_resource.yaml 1.8 KB 14b534b216bbc89408797f65272716c4
statistics/