DNase-seq_ENCSR269SIA
DNase-seq ENCSR269SIA [biosample_summary="Homo sapiens G401"]
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| Id: | DNase-seq/ENCSR269SIA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR269SIA [biosample_summary="Homo sapiens G401"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF671CNQ|/files/ENCFF671CNQ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR269SIA | float |
DNase-seq_ENCSR269SIA |
DNase-seq ENCSR269SIA [biosample_summary="Homo sapiens G401"]
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[0.0263, 26] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF309YIK.bed.gz | 1.81 MB | 0271a0d29ff8dae9f0b3abcb140180c0 |
| ENCFF309YIK.bed.gz.dvc | 101.0 B | d2ceb428a802abd7723fe673433facf0 |
| ENCFF309YIK.tabix.bed.gz | 1.68 MB | 7a3013d96f7d2028d48b0733e9e58f85 |
| ENCFF309YIK.tabix.bed.gz.dvc | 107.0 B | 50fc3b67429f5d48eca060e154ded355 |
| ENCFF309YIK.tabix.bed.gz.tbi | 517.8 KB | 77a6e8e57019ae01b740f3811531942a |
| ENCFF309YIK.tabix.bed.gz.tbi.dvc | 110.0 B | efd6db046a94bee6aa504a0d56b6ca68 |
| genomic_resource.yaml | 1.91 KB | e25760861de9994b3ea060b210656d2b |
| genomic_resource_original.yaml | 1.84 KB | 7f47ac3f684266c8c04f186cda7896eb |
| statistics/ |