Resource

Id DNase-seq/ENCSR268QCHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR268QCH [biosample_summary="Homo sapiens right renal cortex interstitium tissue male embryo (105 days)"]
Description
Labels
  • accession: ENCSR268QCH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0018118/
  • biosample_summary: Homo sapiens right renal cortex interstitium tissue male embryo (105 days)
  • date_created: 2015-09-16T21:42:33.361764+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR268QCH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (105 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR268QCH float

DNase-seq_ENCSR268QCH
DNase-seq ENCSR268QCH [biosample_summary="Homo sapiens right renal cortex interstitium tissue male embryo (105 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR268QCH [0.214, 19.1]
n
9,275,977
mean
2.81
sd
2.43

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 92759770.29% 50821
chr1 862707 0.35% 4713
chr2 724162 0.30% 4004
chr3 606245 0.31% 3315
chr4 487484 0.26% 2654
chr5 525031 0.29% 2888
chr6 548946 0.32% 3008
chr7 468652 0.29% 2566
chr8 414748 0.29% 2276
chr9 392848 0.28% 2149
chr10 440500 0.33% 2440
chr11 471936 0.35% 2563
chr12 467325 0.35% 2561
chr13 253643 0.22% 1408
chr14 310914 0.29% 1637
chr15 304764 0.30% 1675
chr16 305353 0.34% 1685
chr17 359348 0.43% 1976
chr18 214863 0.27% 1181
chr19 403225 0.69% 2088
chr20 234170 0.36% 1337
chr21 96561 0.21% 541
chr22 159466 0.31% 897
chrX 215546 0.14% 1220
chrY 7540 0.01% 39
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50821 1 800 182.52 180
global segment-length histogram

Files

Filename Size md5
ENCFF324SRM.bed.gz 534.05 KB d2c7ee8ac2755749d89297259fb74291
ENCFF324SRM.tabix.bed.gz 476.55 KB 2563d4f76d25d1422b0391341f3a9cf7
ENCFF324SRM.tabix.bed.gz.tbi 278.4 KB da28a57b9969ef102bb75884c333fafc
genomic_resource.yaml 1.9 KB 2d29198b3e3405f3f914df3ddc684821
statistics/