Resource

Id DNase-seq/ENCSR267UFMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR267UFM [biosample_summary="Homo sapiens placenta tissue embryo"]
Description
Labels
  • accession: ENCSR267UFM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue embryo
  • date_created: 2019-08-02T16:57:25.553689+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR267UFM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: embryo
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR267UFM float

DNase-seq_ENCSR267UFM

DNase-seq ENCSR267UFM [biosample_summary="Homo sapiens placenta tissue embryo"]
HISTOGRAM FOR DNase-seq_ENCSR267UFM [0.019, 49.1]
n
55,698,432
mean
1.08
sd
2.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 556984321.73% 283448
chr1 5135339 2.06% 25999
chr2 4343619 1.79% 22131
chr3 2858818 1.44% 14879
chr4 1772179 0.93% 9233
chr5 2436260 1.34% 12687
chr6 2414820 1.41% 12714
chr7 2981138 1.87% 15199
chr8 2297688 1.58% 11707
chr9 2661842 1.92% 13468
chr10 2781438 2.08% 14200
chr11 3349760 2.48% 16521
chr12 2275039 1.71% 11827
chr13 883568 0.77% 4703
chr14 2035830 1.90% 10213
chr15 1999233 1.96% 10248
chr16 2526831 2.80% 12727
chr17 3230455 3.88% 16095
chr18 846527 1.05% 4477
chr19 2536231 4.33% 12549
chr20 1948091 3.02% 9912
chr21 963616 2.06% 4743
chr22 2084823 4.10% 10028
chrX 1331684 0.85% 7159
chrY 3603 0.01% 29
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 283448 1 1200 196.5 180
global segment-length histogram

Files

Filename Size md5
ENCFF757WDW.bed.gz 2.85 MB 15412e48356049b8acce4123fec20bcd
ENCFF757WDW.tabix.bed.gz 2.66 MB f77464dd487d9a626330035b95a890e0
ENCFF757WDW.tabix.bed.gz.tbi 442.33 KB f67f7303e3582fd02b374956fe865b82
genomic_resource.yaml 1.13 KB 7e3e69bcd7d4f704f4a116765519ec3b
statistics/