Resource

Id DNase-seq/ENCSR266NDCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR266NDC [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour"]
Description
Labels
  • accession: ENCSR266NDC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour
  • date_created: 2020-04-18T22:21:50.988777+00:00
  • date_released: 2020-09-23
  • doi: 10.17989/ENCSR266NDC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR266NDC float

DNase-seq_ENCSR266NDC
DNase-seq ENCSR266NDC [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR266NDC [0.29, 47.8]
n
5,909,159
mean
6.53
sd
6.25

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 59091590.18% 31106
chr1 608433 0.24% 3218
chr2 406003 0.17% 2131
chr3 309184 0.16% 1640
chr4 190826 0.10% 992
chr5 259582 0.14% 1372
chr6 327674 0.19% 1745
chr7 272447 0.17% 1440
chr8 214816 0.15% 1146
chr9 237632 0.17% 1246
chr10 253713 0.19% 1335
chr11 312384 0.23% 1638
chr12 307562 0.23% 1598
chr13 115629 0.10% 604
chr14 210814 0.20% 1121
chr15 188028 0.18% 1019
chr16 249196 0.28% 1313
chr17 382311 0.46% 2001
chr18 86470 0.11% 463
chr19 436254 0.74% 2187
chr20 162279 0.25% 879
chr21 64878 0.14% 351
chr22 143675 0.28% 763
chrX 169369 0.11% 904
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 31106 1 860 189.97 180
global segment-length histogram

Files

Filename Size md5
ENCFF011PUO.bed.gz 344.17 KB ac9252f7bf278bd0ee77c2454a5e3651
ENCFF011PUO.tabix.bed.gz 310.12 KB 5c3a04925a2cd07e1f15f9a22a495f4b
ENCFF011PUO.tabix.bed.gz.tbi 177.13 KB 9c6ae138a5d691f1a1071460384a4a1f
genomic_resource.yaml 2.41 KB e6d703413c54a9a9ffd114b3bacc14d6
statistics/