| Id: | DNase-seq/ENCSR266NDC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR266NDC [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour output_type: peaks audit_warning: Alignment file {ENCFF503HKL|/files/ENCFF503HKL/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 31164880 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR266NDC | float |
DNase-seq_ENCSR266NDC |
DNase-seq ENCSR266NDC [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour"]
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[0.29, 47.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF011PUO.bed.gz | 344.17 KB | ac9252f7bf278bd0ee77c2454a5e3651 |
| ENCFF011PUO.bed.gz.dvc | 100.0 B | 89225495ec00909d0bf0ffbd5c809fcb |
| ENCFF011PUO.tabix.bed.gz | 310.12 KB | 5c3a04925a2cd07e1f15f9a22a495f4b |
| ENCFF011PUO.tabix.bed.gz.dvc | 106.0 B | 106e9cfda7928180d5817b30c046546e |
| ENCFF011PUO.tabix.bed.gz.tbi | 177.13 KB | 9c6ae138a5d691f1a1071460384a4a1f |
| ENCFF011PUO.tabix.bed.gz.tbi.dvc | 110.0 B | 98ca23eb2f298571a0729914e5373e86 |
| genomic_resource.yaml | 2.41 KB | e6d703413c54a9a9ffd114b3bacc14d6 |
| genomic_resource_original.yaml | 2.19 KB | c7aa4e5250a40aa4e615402725ef36f3 |
| statistics/ |